Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAATTTTGCATCTGGTCTTCTTAAATTGGGCCATAATGAAGATAGCCGTGTTGCCATTTTCTCTGATACCCGGGCTGAGTGGCTCATTGCCCTTCAGgtaaatttgctttatttgcattatatcctcaagtcattccattaccttttggcttaactattttgtattcagaaattttgatgaattttttttgctaaacttcag

Basic information

species Glycine max
transcript GLYMA20G07280.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G07280.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0057g01270.t01 (Vitis vinifera), 5'ss of exon 2
GTCCAATTTTGCATCTGGTCTTCTTAAATTGGGCCATAATGAAGATAGCCGTGTTGCCATTTTCTCTGATACCCGGGCTGAGTGGCTCATTGCCCTTCAGgtaaatttgctttatttgcattatatcctcaagtcattccattaccttttggcttaactattttgtattcagaaattttgatgaattttttt-tgctaaacttcag
 | ||| ||||||||||| ||| ||||||| |||||||||| |||||||| |||||||||||| ||||| || | ||| || |||||||||||| ||||||||   || ||   ||||   |   |  | |   | || |  | |  | ||| ||||  || | | || |||| ||  || |    || | | |    ||  ||||
TTGCAACTTTGCATCTGGACTTATTAAATTAGGCCATAATGTAGATAGCCATGTTGCCATTTTTTCTGACACTCAGGCAGAATGGCTCATTGCCTTTCAGgtagccttcctgattttgatct---tttttagtacttttctctgctatgtggtttaaacatgt-gaatgcagacataatgctacccttatgtgtttctaaaatcag