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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAATTTTGCATCTGGTCTTCTTAAATTAGGCCATAGTGCAGATAGCCGTGTTGCAATTTTCTCTGATACAAGGGCTGAGTGGCTCATTGCCCTTCAGgtaaattatgcttgcttttattgagtcattccattaccttttggcttaattcacacattttaatgacaatcttgctaaacttcag

Basic information

species Glycine max
transcript GLYMA20G07060.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G07060.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0057g01270.t01 (Vitis vinifera), 5'ss of exon 2
GTCAAATTTTGCATCTGGTCTTCTTAAATTAGGCCATAGTGCAGATAGCCGTGTTGCAATTTTCTCTGATACAAGGGCTGAGTGGCTCATTGCCCTTCAGgtaaattatgcttgcttttat-tgagtcattccattaccttttggcttaattcacacattttaatgacaatct--tgctaaacttcag---------------
 |  || ||||||||||| ||| ||||||||||||||| || |||||||| |||||| ||||| ||||| ||   ||| || |||||||||||| ||||||||   | | ||   ||| || |   | | | | || |  |      |  || | |||| | ||||   |  |  |||||  |||  |               
TTGCAACTTTGCATCTGGACTTATTAAATTAGGCCATAATGTAGATAGCCATGTTGCCATTTTTTCTGACACTCAGGCAGAATGGCTCATTGCCTTTCAGgtagcct-tcctgattttgatcttttttagtacttttctctgctatgtggtttaaacatgtgaatgcagacataatgctacccttatgtgtttctaaaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610465|gb|DB958784.1|DB958784
EST:     GTGTTGCAATTTTCTCTGATACAAGGGCTGAGTGGCTCATTGCCCTTCAG                         GGTTGCTTCAGGCAGAATGTAACAGTTGTTACTATTTACGCTACATTAGGT
genomic: GTGTTGCAATTTTCTCTGATACAAGGGCTGAGTGGCTCATTGCCCTTCAGgtaaattatg ... taaacttcagGGTTGCTTCAGGCAGAATGTAACAGTTGTTACTATTTACGCTACATTAGGT