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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTAGCCAGTATCTGGAGAATTACCTGTGGCCTTATTTCGACCCTCTCACTGCCACCTTCGAGCATGTTATGTCCATCATCATCATGGTCAACGAGAAGgtctctctcctcttctaataatgttcatcattcattcgttatatgtataaaattcactcattgtcttgtgtgccttgcag

Basic information

species Glycine max
transcript GLYMA20G00260.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g26960.1 (Oryza sativa), 5'ss of exon 1
GGTTAGCCAGTATCTGGAGAATTACCTGTGGCCTTATTTCGACCCTCTCACTGCCACCTTCGAGCATGTTATGTCCATCATCATCATGGTCAACGAGAAGgtctc--tctcctcttctaataatgttcatcattc--attcgttatatgtataaaattcactcattgtcttgtgtgccttgcag-------------------------------------
||| |||||||| || ||||| ||||| |||||  | ||||||||   |   ||| |||||||||| || |||||||| ||| |||||||||||||||||||      |  | |  ||  |      |   | ||  ||| |    ||   |         ||  |  || | | |  ||  ||                                     
GGTCAGCCAGTACCTCGAGAACTACCTCTGGCCAAACTTCGACCCGGCCGGCGCCTCCTTCGAGCACGTCATGTCCATGATCCTCATGGTCAACGAGAAGgtgctgacccgcccccctcttcgacccccctactcgaattggagcaatcgctgttggctgttcccttgctcgggcgatttctagggtttctgatgtagtttgggtttttttttgtgtgcag

upper sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G410479_T01 (Zea mays), 5'ss of exon 1
GGTTAGCCAGTATCTGGAGAATTACCTGTGGCCTTATTTCGACCCTCTCACTGCCACCTTCGAGCATGTTATGTCCATCATCATCATGGTCAACGAGAAGgtctctctcctcttctaataatgttcatcattcattcgttatatgtataaaattcactcattgtcttgtgtgccttgcag------------------
||| |||||||| || ||||| |||||||||||  | ||||||||  |    ||  |||||||||| || |||||||||||| ||||||||||||||||||||   ||   |    |||    ||       |  | | |   ||     |  ||   || | ||| | ||  ||  ||                   
GGTCAGCCAGTACCTTGAGAACTACCTGTGGCCGCACTTCGACCCGGTTGACGCTTCCTTCGAGCACGTAATGTCCATCATCCTCATGGTCAACGAGAAGgtcagcctttgccctgaattggattggag---cgcttgctggctgctgctagctcgggcaatttctagggtttctgacatggtttgggccttgtgcag

upper sequence: GLYMA20G00260.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0056g01110.t01 (Vitis vinifera), 5'ss of exon 1
GGTTAGCCAGTATCTGGAGAATTACCTGTGGCCTTATTTCGACCCTCTCACTGCCACCTTCGAGCATGTTATGTCCATCATCATCATGGTCAACGAGAAGgt-----ctctctcctcttctaataatgttcatcattcattcgttat------atgta------taaaattcactcattgtcttgtgtgcct-tgcag--
 || || |||||||||||||||||| |||||||| ||||||| |||   || ||  | || |||||||| ||||| || ||  ||||||| |||||||||||     || |   ||  | |   ||  || |    |  || |||        |||||       || ||  | |    ||  ||  | | | ||| |  
AGTGAGTCAGTATCTGGAGAATTACTTGTGGCCTAATTTCGATCCTGAAACGGCGTCATTTGAGCATGTGATGTCGATGATACTCATGGTGAACGAGAAGgtacgggctttgctctggttttgaaacttttaggtctgtttggttgccaggaaatgtaggaaaacaagataaaatggaggttgtgaattcatatgctggg