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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGTACTATTTGAGGAAGAAGATGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGGCTCGAACCATGGGACATACAAGgtgatgatttttttgctaagtagctaagataattaatgagtagtgcatgtaattgattaatttgtgcag

Basic information

species Glycine max
transcript GLYMA19G44910.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G44910.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g02300.1 (Oryza sativa), 5'ss of exon 1
TTGCAGTACTATTTGAGGAAGAAGATGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGGCTCGAACCATGGGACATACAAGgtgatgat-------ttttttgctaagtagc----------taagataattaatgagtagt--gcatgtaattgattaatttgtgcag-----------------------------------------------------------
 |  | |||||  |  | |||||| |  ||  |||| |||||||||||||||| || ||||| || || ||||||| |||||| ||||||||||| ||||||    |        ||  |    |  || |          |   ||  | |||   |||    ||  |   ||||  |||| |  |                                                            
CTCAACTACTACCTCCGCAAGAAGGTCGCCTCCGAGCAGATCGACCTCGACGTCATCCGCGACGTCGACCTCAACAAGCTCGAGCCATGGGACATCCAAGgtagctaagctagtattcctcatcatataacctttctcctctccaattctcaatttctagctaccaaatcgatgatggatttatcaatcaatcgagctaagctagctaagtaatggtgtgtgtgcaaaatatatattgtggttgcag

upper sequence: GLYMA19G44910.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g04090.1 (Oryza sativa), 5'ss of exon 1
TTGCAGTACTATTTGAGGAAGAAGATGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGGCTCGAACCATGGGACATACAAGgtgatgatttttttgctaagtagctaagataattaatgagtagtgcatgtaatt-gattaatttgtgcag-------------------------
 ||   |||||  ||| ||||||| || ||   |||   |||||||||||||| || ||||| || || ||||||| |||||| ||||||||||| ||||||    | ||     |  |       |   | |  ||   |  |  |  |  || ||| ||| || |||                          
CTGACATACTACCTGAAGAAGAAGGTGGCCTCGGAGCGCATCGACCTCGACGTCATCCGCGACGTCGACCTCAACAAGCTCGAGCCATGGGACATCCAAGgtacgtaattaagcacacacacatcgatcaattcgatcgatttttgacatgttttgatcaatgtg-gcatgtgtgtatcatacatacatatgcag

upper sequence: GLYMA19G44910.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G092465_T03 (Zea mays), 5'ss of exon 1
TTGCAGTACTATTTGAGGAAGAAGATGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGGCTCGAACCATGGGACATACAAGgtgatgatttttttgctaagtagctaagataattaatgagtagtgcatgtaattgatt--aatttgtgcag-----------------------------
 |  | |||||  |  | |||||| || ||  | || |||||||||||||||| || ||||| || || ||||||| |||||| ||||||||||| ||||||    |  |     |       |       ||     |  | ||| |        ||  | ||   |||                              
CTCAACTACTACCTCCGCAAGAAGGTGGCCTCCCAGGAGATCGACCTCGACGTCATCCGCGACGTCGACCTCAACAAGCTCGAGCCATGGGACATCCAAGgtacgtacgtacgcacggccggtccggtccgatccggtaccactgccttcttcaacttcaagttcaagcacgcgcgcgcgcagtagcagagcagctcgtg

upper sequence: GLYMA19G44910.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G069047_T01 (Zea mays), 5'ss of exon 1
TTGCAGTACTATTTGAGGAAGAAGATGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGGCTCGAACCATGGGACATACAAGgt--gatgatttttttgctaagtagctaagataattaa----tgagtagtgcat------gtaattgattaatttgtgcag----------------------------------------------------------------------------------------------------------
 |  | |||||  |  | |||||| || ||  | || ||||||||||||| || || ||||| || || ||||||| |||||| ||||||||||| ||||||  | |    ||    | |  || ||   ||     |     ||| |  ||||      || ||      ||  |  | |                                                                                                          
CTCAACTACTACCTCCGCAAGAAGGTGGCCTCCCAGCAGATCGACCTCGATGTCATCCGCGACGTCGACCTCAACAAGCTCGAGCCATGGGACATCCAAGgtacggtatacttaccaccatataccttccatctccgaggtccgagcaaagcatcagctcgtgatcataggatcggatcggagctggtgacctgatggtcatgtcacacgagcatgaacgtgagctgatcatcgtacgtccatggcgctgatcatcggggttagttatcgattctgcgtgcatgcag

upper sequence: GLYMA19G44910.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G46770.1 (Arabidopsis thaliana), 5'ss of exon 1
TTGCAGTACTATTTGAGGAAGAAGATGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGGCTCGAACCATGGGACATACAAGgt-----------gatgatttttttgctaagtagcta----------agataattaatgagtagtgcatgtaattgattaatttgtgcag----------
|||||||| ||| |  |||||||  |    | |    ||||||| || || || |||||||| ||||||||||||| |||||| || |||||||| ||||||            |  | ||||||   || ||  |           | |   | |      | |      |||| |||||||| | ||           
TTGCAGTATTATCTCCGGAAGAAAGTTAATAGCATCGAGATCGATCTTGATGTCATTCGCGACGTTGATCTCAACAAGCTCGAGCCTTGGGACATTCAAGgtttatttccataaagaaattttttatgaattaattttctctctttcacactctcataatccaattttccgaatttattaatttttccatatatatgaaa