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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGTACTATTTGAGGAAGAAGGTGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGACTCGAACCATGGGACATACAAGgtgatgattttttttgctcagtagctaagataattgatgagtagtgcatgtaattaattaatttgtgcag

Basic information

species Glycine max
transcript GLYMA19G44890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G44890.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g02300.1 (Oryza sativa), 5'ss of exon 1
TTGCAGTACTATTTGAGGAAGAAGGTGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGACTCGAACCATGGGACATACAAGgtgatgatttt--ttttgctcagtagctaagataattgatgagtagtgc-----atgtaattaattaatttgtgcag----------------------------------------------------------------------
 |  | |||||  |  | ||||||||  ||  |||| |||||||||||||||| || ||||| || || |||||||  ||||| ||||||||||| ||||||    |   |  | || ||||  |  |||  |   |  |    | | |      | ||  ||   |||   ||  |                                                                      
CTCAACTACTACCTCCGCAAGAAGGTCGCCTCCGAGCAGATCGACCTCGACGTCATCCGCGACGTCGACCTCAACAAGCTCGAGCCATGGGACATCCAAGgtagctaagctagtattcctcatcatataacctttctcctctccaattctcaatttctagctaccaaatcgatgatggatttatcaatcaatcgagctaagctagctaagtaatggtgtgtgtgcaaaatatatattgtggttgcag

upper sequence: GLYMA19G44890.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os06g04090.1 (Oryza sativa), 5'ss of exon 1
TTGCAGTACTATTTGAGGAAGAAGGTGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGACTCGAACCATGGGACATACAAGgtg-atgatt--ttttttgctcagtagctaagataattgatgagtagtgcatgt-aattaat-taatttgtgcag-------------------
 ||   |||||  ||| |||||||||| ||   |||   |||||||||||||| || ||||| || || |||||||  ||||| ||||||||||| ||||||   | |||         | ||      ||    || |||   |      | |  || ||| |    ||||                      
CTGACATACTACCTGAAGAAGAAGGTGGCCTCGGAGCGCATCGACCTCGACGTCATCCGCGACGTCGACCTCAACAAGCTCGAGCCATGGGACATCCAAGgtacgtaattaagcacacacacatcgatcaattcgatcgatttttgacatgttttgatcaatgtggcatgtgtgtatcatacatacatatgcag

upper sequence: GLYMA19G44890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G092465_T03 (Zea mays), 5'ss of exon 1
TTGCAGTACTATTTGAGGAAGAAGGTGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGACTCGAACCATGGGACATACAAGgtg-atgattttttttgctcagtagctaagataattgatgagtagtgcatgtaattaatt--aatttgtgcag-----------------------------
 |  | |||||  |  | ||||||||| ||  | || |||||||||||||||| || ||||| || || |||||||  ||||| ||||||||||| ||||||   |   |      |  | ||  |       ||     |  | ||| |      | ||  | ||   |||                              
CTCAACTACTACCTCCGCAAGAAGGTGGCCTCCCAGGAGATCGACCTCGACGTCATCCGCGACGTCGACCTCAACAAGCTCGAGCCATGGGACATCCAAGgtacgtacgtacgcacggccggt--ccggtccgatccggtaccactgccttcttcaacttcaagttcaagcacgcgcgcgcgcagtagcagagcagctcgtg

upper sequence: GLYMA19G44890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G069047_T01 (Zea mays), 5'ss of exon 1
TTGCAGTACTATTTGAGGAAGAAGGTGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGACTCGAACCATGGGACATACAAGgtgatg-attttttttgctcagtagctaagataattga----tgagtagtgcat------gtaattaattaatttgtgcag----------------------------------------------------------------------------------------------------------
 |  | |||||  |  | ||||||||| ||  | || ||||||||||||| || || ||||| || || |||||||  ||||| ||||||||||| ||||||   | ||  ||    |    || ||   ||    ||     ||| |  ||||      || || |    ||  |  | |                                                                                                          
CTCAACTACTACCTCCGCAAGAAGGTGGCCTCCCAGCAGATCGACCTCGATGTCATCCGCGACGTCGACCTCAACAAGCTCGAGCCATGGGACATCCAAGgtacggtatacttaccaccatataccttccatctccgaggtccgagcaaagcatcagctcgtgatcataggatcggatcggagctggtgacctgatggtcatgtcacacgagcatgaacgtgagctgatcatcgtacgtccatggcgctgatcatcggggttagttatcgattctgcgtgcatgcag

upper sequence: GLYMA19G44890.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G46770.1 (Arabidopsis thaliana), 5'ss of exon 1
TTGCAGTACTATTTGAGGAAGAAGGTGTCCAACGAGAAGATCGACCTCGACGTGATTCGCGATGTTGATCTCAACAGACTCGAACCATGGGACATACAAGgt----------gatgattttttttgctcagtag--------ctaagataat-tgatgagt-agtgcatgtaattaattaatttgtgcag----------
|||||||| ||| |  ||||||| ||    | |    ||||||| || || || |||||||| |||||||||||||  ||||| || |||||||| ||||||           | ||  ||||||    | ||         ||   | | | | || |   | |      |||| |||||||| | ||           
TTGCAGTATTATCTCCGGAAGAAAGTTAATAGCATCGAGATCGATCTTGATGTCATTCGCGACGTTGATCTCAACAAGCTCGAGCCTTGGGACATTCAAGgtttatttccataaagaaattttttatgaattaattttctctctttcacactctcataatccaattttccgaatttattaatttttccatatatatgaaa