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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCACACCTCACTCACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttccctttcccttccttttttcgctacaaatctgcacataattactcgaaatatcactttcggagtcctatttgattactttcaagctttgttt...

Basic information

species Glycine max
transcript GLYMA19G43190.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G28060.1 (Arabidopsis thaliana), 5'ss of exon 1
GGCACACCTCACTCACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttccctttcccttccttttttcgctacaaatctgcacataattactcgaaatatcactttcggagtcctatttgattactttcaagctttgttt--
| |  | |||    | | ||  | |   |||||||| || ||||| || ||| | ||| |||| ||||||||||||||||||||  |||| ||||| || ||||||| || | ||  |      ||| || |     | |    ||  |  |||   ||||   |    |   ||||  | |||  |  || |  | ||   
GACTGATCTCGGAAAGTAAATCGCAGCCATGGCGGAAAAAGCTGTCACTATCAGGACCAGAAACTTCATGACCAACAGGCTTCTCGCCAGAAAGCAATTCgtgagttcccatctctatgttccattttgcaatctcacagtgt-tacgtcttcgctgtatcgaatgataaaaactata-gtttaggtagaaacaatcttata

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 1
GGCACACCTCACTCACTGAACGGTA---AGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttccct-ttcccttccttttttcgctacaaatctgcacataattactcgaaatatcactttc---ggagtcctatt-tgattactttcaagctttgttt
    ||| | | ||  |||   |||   |  ||||| || ||||| || || ||||||||| | || |||||||||||||| ||||| |||||||||||||| ||||||| |  | ||   || || || ||  |    || |     |  ||  ||    | |   |||    ||| ||   || | |||   |   | |       
---TCACTTTAATCCTTGAGAAGTAGCAAAAATGGCTGAAAAGGCGGTCACCATCCGAACCAGGAAATTCATGACCAACAGACTTCTCTCCAGGAAGCAGTTCgtgagttccattattttttttctcttctctatctgcatatcatttttgttcttctgggttttgttttaatgggaatctagttataatttgatatgaaccc-----

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 1
--GGCACACCTCACTCACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttccctttcccttcctttt-ttcgctacaaatctgcacataattactcgaaatatcactttcggagtcc-tatttgattactttcaagctttgttt
     ||| |  |||  |  | |   ||  |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||| ||||      |||  |||  |  ||| |   | | ||| |    |||| |   || | |  |   | || ||||   || |  ||||||| 
CCTCGACAGCCGACT--CCAAGCAACAACAATGGCGGACAAGGCCGTTACCATCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttccttttcttcctgtttggttccttggaaagcaaaagaaaatgaaggaaaatttttgttcctgtatttatcttagattcaattta--ctttgttc

upper sequence: GLYMA19G43190.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S204_49V6.1 (Physcomitrella patens), 5'ss of exon 1
GGCACACCTCACTCACTGAACGGTA--AGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttccctttcccttccttttttcgctacaaatct---gcacataattactcgaaatatcactttcggagtcctatttgattactttcaagctttgttt
      || ||  ||   | | | |  |  ||||| ||||||||    ||  | || || || |||||||||||||||||||| ||  ||||||||||||| || ||   || |  ||    | ||| |||||     | |   | ||||        | || | | | || |   |     ||| ||    |   |  || |  
-CTGAGCCCCAGCCAGC-AGCAGCAGCATCATGGCTGACAAGGCGTGCACTGTGCGCACTCGCAAGTTCATGACCAACAGGCTGCTCGCCAGGAAGCAGTTCgtaagcacccgtggcct---cctttctcgcttagggtttctggaacattggcttgtgtaacacctcattagagttttcgcttggttgtggttgtgacttctca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888756|gb|BQ741969.1|BQ741969
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298195443|gb|HO039274.1|HO039274
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|151411432|gb|EV281243.1|EV281243
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298197162|gb|HO041905.1|HO041905
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|7285619|gb|AW598106.1|AW598106
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298188537|gb|HO035230.1|HO035230
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|254329668|gb|GR839221.1|GR839221
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192316519|gb|FK006782.1|FK006782
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|213589380|gb|DB961713.1|DB961713
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|213608688|gb|DB968975.1|DB968975
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|7232606|gb|AW567961.1|AW567961
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCC
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCC
EST: gi|192321822|gb|FK013214.1|FK013214
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298188446|gb|HO035139.1|HO035139
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|209713764|gb|BW679427.1|BW679427
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|42723225|gb|CK769124.1|CK769124
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|209713765|gb|BW679428.1|BW679428
EST:     AGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: AGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192296602|gb|FG992348.1|FG992348
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|11687434|gb|BF595110.1|BF595110
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|16997148|gb|BM086520.1|BM086520
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298193142|gb|HO033576.1|HO033576
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192311311|gb|FK003782.1|FK003782
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|209699645|gb|BW652056.1|BW652056
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192323416|gb|FK015302.1|FK015302
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298183048|gb|HO028311.1|HO028311
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192296601|gb|FG992347.1|FG992347
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|207834838|gb|GD808601.1|GD808601
EST:     TCCGAACCCGAAAGTTCATGACCAACAGACTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298177156|gb|HO027051.1|HO027051
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192326448|gb|FK015935.1|FK015935
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|11689424|gb|BF597100.1|BF597100
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCATTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|214007771|gb|DB986137.1|DB986137
EST:     CCGAACCCGAAAGTTCATGACCAACAGGC-TCTTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: CCGAACCCGAAAGTTCATGACCAACAGGCTTC-TTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|209714320|gb|BW665582.1|BW665582
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|151407879|gb|EV277694.1|EV277694
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|213606613|gb|DB972534.1|DB972534
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298187430|gb|HO034579.1|HO034579
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192326464|gb|FK017721.1|FK017721
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192321821|gb|FK013213.1|FK013213
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|254329667|gb|GR839220.1|GR839220
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|213596459|gb|DB962047.1|DB962047
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|13788328|gb|BG650920.1|BG650920
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|37994884|gb|CF806473.1|CF806473
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|15814867|gb|BI787142.1|BI787142
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCACACCTCACTCACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttccctttcccttccttttttcgctacaaatctgcacataattactcgaaatatcactttcggagtcctatttgattactttcaagctttgttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc