Sequence
atgc intronic sequence ATGC exonic sequenceATGGCGGAGAGTGCAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTGCTCAGgtattgtacctctcacactcaaccttttcatgccaatgtattgctattctcttgcgttgataatgcatgtaacacaaggaactaacatattgcattcttt...
Basic information
species | Glycine max |
transcript | GLYMA19G42530.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G42530.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G05190.1 (Arabidopsis thaliana), 5'ss of exon 1
----------------ATGGCGGAGAGTGCAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTGCTCAGgtattgtacctctcacactcaaccttttcatgccaatgtattgc-tatt--ctcttgcgttgataatgcatgtaacacaaggaactaacatattgcattcttt
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TGAGAGTTTGACACCGTCATCAATGGCAGAACCGGAGGTGATTCACTCATGGTCTGCACCAAGATCTCTCAGCACCAGCCTCATGTACTCCTTTGCTCAGgtactatacccaactttttcctatcttcttgacaaattttccaagtgttaactctaaagattatgat-catccaaaacca--aatctcaattctgctttgctc
upper sequence: GLYMA19G42530.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G27410.2 (Arabidopsis thaliana), 5'ss of exon 11
----------------ATGGCGGAGAGTGCAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTGCTCAGgtattgtacctctcacactcaaccttttca------tgccaatgtattgctattctcttgcgttgataatgcatgtaacacaaggaactaacatattgcattcttt
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GTTGAGATTGATTTCAAAGGGATCGTCTTTAATGGAGGTGATACACGCATGGTCTGCTCCAAGATCACTCAGCACCACTCTCATGTACTCCTTTGCCCAGgtactctttttgtttt-cttaccttactcagagatttttcctggaaatggaacagatttgcccaggtactgttt-tatcatagaaaatttattgatgatcta----
upper sequence: GLYMA19G42530.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0128g00100.t01 (Vitis vinifera), 5'ss of exon 11
----------------ATGGCGGAGAGTGCAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTGCTCAGgtattgtacctctcacactcaaccttttcatgccaatgtattgctattctcttgcgttgataatgcatgtaacacaaggaa--ctaacatattgcattcttt
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TTCAGTCATGGGGGACCCGGGAAATCAAGAGATTGAAGTGATCCATTCATGGTCTGCTCCCAGATCTATCAGTACCGGCCTCATGTACTCGTTTGCTCAGgt-ttgtgcttctttaattgatcgattgtttggttgctgagaaaaagaaaatgagggaaaagagcaagaaaatggatggaagtcttgaagtttgtgttggt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298172582|gb|HO019622.1|HO019622EST: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTGCTCAG AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTGCTCAGgtattgtacc ... tgccacgcagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGCGGAGAGTGCAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTGCTCAGgtattgtacctctcacactcaaccttttcatgccaatgtattgctattctcttgcgttgataatgcatgtaacacaaggaactaacatattgcattcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcac