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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCCCCTGAAACGCTCCTCAACACTCCCAAAAACTCCGACACCCTTCCTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAgtaattatatattttctcacttatggctaagtatttgatttgtgctaggatttctggtaacataacatgctacttagtacttacttcctggtacaaatta...

Basic information

species Glycine max
transcript GLYMA19G42180.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5760326|gb|AI965753.1|AI965753
EST:     CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAA                         GTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
genomic: CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAgtaattatat ... gttgaattagGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
EST: gi|213591486|gb|DB973863.1|DB973863
EST:     CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAA                         GTTGGAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
genomic: CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAgtaattatat ... gttgaattagGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
EST: gi|254314926|gb|GR829919.1|GR829919
EST:     CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAA                         GTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
genomic: CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAgtaattatat ... gttgaattagGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
EST: gi|213610542|gb|DB960595.1|DB960595
EST:     CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAA                         GTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
genomic: CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAgtaattatat ... gttgaattagGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
EST: gi|209705709|gb|BW653123.1|BW653123
EST:     CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAA                         GTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
genomic: CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAgtaattatat ... gttgaattagGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
EST: gi|209699831|gb|BW652510.1|BW652510
EST:     CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAA                         GTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
genomic: CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAgtaattatat ... gttgaattagGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
EST: gi|213597711|gb|DB962165.1|DB962165
EST:     CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAA                         GTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
genomic: CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAgtaattatat ... gttgaattagGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
EST: gi|213619505|gb|DB967751.1|DB967751
EST:     CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAA                         GTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
genomic: CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAgtaattatat ... gttgaattagGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
EST: gi|213614567|gb|DB972835.1|DB972835
EST:     CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAA                         GTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT
genomic: CTTATCTCGACATCTTCGACTCCCCCAAACTCATGGCAACTCCCGCTCAAgtaattatat ... gttgaattagGTTGAAAGGTCTGTTTCATACAACGAACACCGGCCCAGAAGGCCGCCACCT