Sequence
atgc intronic sequence ATGC exonic sequenceCAGCATGGAGTTCCTTTATAGAACAGGTGGTGATGGTCCTCTTGTTGCTTTTGGAGCATCTGATGGTGTCATTAGAGTTCTATCAATGATGACATGGAAGgtggggacctgaaaaattaatattaatctagttacaattattagcatatcatgtgatactttagttacttgcag
Basic information
species | Glycine max |
transcript | GLYMA19G41130.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G41130.2 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g46510.1 (Oryza sativa), 5'ss of exon 5
CAGCATGGAGTTCCTTTATAGAACAG---GTGGTGATGGTCCTCTTGTTGCTTTTGGAGCATCTGATGGTGTCATTAGAGTTCTATCAATGATGACATGGAAGgtggggacctgaaaaattaatattaatctagtta-caattattagcatatcatgtgatact-ttagttacttgcag
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---TATGGAATTCCTCTCCAGGTCATCTTCTAGTGACGCTCCTCTGGTTGCATTTGGATCTTCTGATGGAGTGATAAGAGTTCTTTCAATGCTGACATGGAAGgttaaaaa-tgtcctatcc-tctcactctgttcctccattactt-cattttaaatcttacagttgaatccgtgcag
upper sequence: GLYMA19G41130.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G000177_T01 (Zea mays), 5'ss of exon 5
CAGCATGGAGTTCCTTTATAGAACAGG---TGGTGATGGTCCTCTTGTTGCTTTTGGAGCATCTGATGGTGTCATTAGAGTTCTATCAATGATGACATGGAAGgtggggacctgaaaaattaatattaatctagttacaattatta----gca--tatcatgtgatactttagttacttgcag
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---TATGGAGTTCCTATCTAGATCATCTTCTAGCGATGCTCCTCTTGTTGCCTTTGGGTCATCTGATGGCGTCATCAGAGTTCTTTCGATGTTGACATGGAAGgttgaacatactctaccttacctccttttcttcattgctggcgtactgcaagtttaaattgagccatttgatccttgcag
upper sequence: GLYMA19G41130.2 (Glycine max), 5'ss of exon 1
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 5
CAGCATGGAGTTCCTTTATAGAACA---GGTGGTGATGGTCCTCTTGTTGCTTTTGGAGCATCTGATGGTGTCATTAGAGTTCTATCAATGATGACATGGAAGgtggggacctgaaaaattaatattaatct-----agttacaattattagcatatcatgtgatactttagttacttgcag---------------------------------
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---CATGGAGTTTCTTTCGAGATCATCTGGTGGTGATGGCCCTTTAGTTGCATTTGGTTCAACTGATGGTGTCATTCGGGTTTTATCAATGATAACATGGAAGgtttgtttgtttcaaaattatattttttttttttggtttctctgctgggtttagagtgagggattttgatactgatctgtgttaatttccttgaatgtttacttccttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120533888|gb|EH262021.1|EH262021EST: TTGGAGCATCTGATGGTGTCATTAGAGTTCTATCAATGATGACATGGAAG CTTGTGCGAAGGTACACTGGAGGTCATAAGGGGTCTATCTCTTGCTTGATG
genomic: TTGGAGCATCTGATGGTGTCATTAGAGTTCTATCAATGATGACATGGAAGgtggggacct ... ttacttgcagCTTGTGCGAAGGTACACTGGAGGTCATAAGGGGTCTATCTCTTGCTTGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCATGGAGTTCCTTTATAGAACAGGTGGTGATGGTCCTCTTGTTGCTTTTGGAGCATCTGATGGTGTCATTAGAGTTCTATCAATGATGACATGGAAGgtggggacctgaaaaattaatattaatctagttacaattattagcatatcatgtgatactttagttacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG