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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCCCACTTCCCAATTCATTTTCATTCCACGAGATATGGCTTCAACTCTGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattactttcatctctttagtagtaatcgtgattattaagtaccttgtttagttctgaactcactctgttcttgacag

Basic information

species Glycine max
transcript GLYMA19G41120.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524028|gb|BU082839.1|BU082839
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|7796797|gb|AW782191.1|AW782191
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|254322390|gb|GR837804.1|GR837804
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|298196328|gb|HO044719.1|HO044719
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCTTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|11413286|gb|BF425297.1|BF425297
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|7591427|gb|AW707160.1|AW707160
EST:     CTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: CTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|192330291|gb|FK020576.1|FK020576
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|13480326|gb|BG509669.1|BG509669
EST:     CCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: CCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|192314667|gb|FK005949.1|FK005949
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|120493127|gb|EH221294.1|EH221294
EST:     CTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: CTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|151407971|gb|EV277786.1|EV277786
EST:     GCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAATCTCAAGCTTAACTCTCCG
genomic: GCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|9986531|gb|BE660639.1|BE660639
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|9986532|gb|BE660640.1|BE660640
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCC
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGG-CGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCC
EST: gi|19452880|gb|BM954290.1|BM954290
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|24136646|gb|BU927156.1|BU927156
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|19934893|gb|BQ079914.1|BQ079914
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|209724787|gb|BW672570.1|BW672570
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|192314666|gb|FK005948.1|FK005948
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|6482896|gb|AW202106.1|AW202106
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|19452860|gb|BM954270.1|BM954270
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|208188697|gb|GD987245.1|GD987245
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|298174540|gb|HO017763.1|HO017763
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCTTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|23733671|gb|BU765041.1|BU765041
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|21889139|gb|BQ742352.1|BQ742352
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
EST: gi|11688232|gb|BF595908.1|BF595908
EST:     TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAG                         ATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG
genomic: TGCTTCCCCTGGCAACCTTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGgtattacttt ... ttcttgacagATTGCTGGGGCGAAAGCACAACCGTTGACTAGTCTCAAGCTTAACTCTCCG