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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAAATCTTTGTTCGGTATTTGCAATCGGGAGAGGCGAGCGAGCGAGCCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctttctgctcacactctccattctccacttcgcaattctctttagtactctaattaggtttctttacaacaaacggattaaactaaactcact...

Basic information

species Glycine max
transcript GLYMA19G38220.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302966|gb|FG996982.1|FG996982
EST:     CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|192302966|gb|FG996982.1|FG996982
EST:     CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|298163396|gb|HO012129.1|HO012129
EST:     CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|298163396|gb|HO012129.1|HO012129
EST:     CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|192302967|gb|FG996983.1|FG996983
EST:     CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|192302967|gb|FG996983.1|FG996983
EST:     CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|298173126|gb|HO020110.1|HO020110
EST:     CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|298173126|gb|HO020110.1|HO020110
EST:     CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|151410169|gb|EV279977.1|EV279977
EST:     CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|151410169|gb|EV279977.1|EV279977
EST:     CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|208310530|gb|GE104182.1|GE104182
EST:     CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         CCTTGCTGGGTTGGCTTTTATGTTTTCAGCTAGCATTTTGCTTCAGATTCT
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcagCCTTGCTGGGTTGGCTTTTATGTTTTCAGCTAGCATTTTGCTTCAGATTCT
EST: gi|192331598|gb|FK023445.1|FK023445
EST:     CCGGCGAGCGACATAAGGTCCCTTCTCAGACATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|192331598|gb|FK023445.1|FK023445
EST:     CCGGCGAGCGACATAAGGTCCCTTCTCAGACATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|298182158|gb|HO026333.1|HO026333
EST:     CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|298182158|gb|HO026333.1|HO026333
EST:     CGGGCGAGAGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|192298572|gb|FG989233.1|FG989233
EST:     CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-
EST: gi|192298572|gb|FG989233.1|FG989233
EST:     CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACG                         T
genomic: CCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctt ... ggacttgcag-

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGAAAATCTTTGTTCGGTATTTGCAATCGGGAGAGGCGAGCGAGCGAGCCGGCGAGCGACATAAGGTCCCTTCTCAGGCATGGCGATGACAGTACACGgtacgtgctttctgctcacactctccattctccacttcgcaattctctttagtactctaattaggtttctttacaacaaacggattaaactaaactcact

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactctcc