Sequence
atgc intronic sequence ATGC exonic sequenceATGAGCAGGTCAGGGCAACCACCGGATTTGAAGAAgtaagtgtacctttcatttttcacttctattttattttattttaatttttcatatttttcatgttctgttacactgctgtggattgatctgtaattatcttttttgttttggggattcgggcag
Basic information
species | Glycine max |
transcript | GLYMA19G38130.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G38130.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S475_6V6.3 (Physcomitrella patens), 5'ss of exon 1
------------------------------------------ATGAGCAGGTCAGGGCAACCACCGGATTTGAAGAAgtaagtgtacctttcatttttcacttctat---tttattttattttaatttttcatatttttcatgttctgtt-acactgctgtggattgatctgtaattatcttttttgttttggggattcgggcag
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TTCAGGTGGGTTTGTAGTAATCAGGGTCGGCTGTCATTCACCATGAGCAAATCAGGGCAACCCCCGGATTTGAAGAAGTACATGGACAAGAAGCTGAACAgtaagacatgtttattttttggaaggcgtttttctaccatctcctctattcatacttctgttg--cgagaggcaatcaaaataattttcctgtgactactaa---
upper sequence: GLYMA19G38130.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S475_6V6.2 (Physcomitrella patens), 5'ss of exon 2
-------------------------------------ATGAGCAGGTCAGGGCAACCACCGGATTTGAAGAAgtaagtgtacctttcatttttcacttctat---tttattttattttaatttttcatatttttcatgttctgtt-acactgctgtggattgatctgtaattatcttttttgttttggggattcgggcag
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GTGGGTTTGTAGTAATCAGGGTCGGCTGTCATTCACCATGAGCAAATCAGGGCAACCCCCGGATTTGAAGAAGTACATGGACAAGAAGCTGAACAgtaagacatgtttattttttggaaggcgtttttctaccatctcctctattcatacttctgttg--cgagaggcaatcaaaataattttcctgtgactactaa---
upper sequence: GLYMA19G38130.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S475_6V6.1 (Physcomitrella patens), 5'ss of exon 2
-------------------------ATGAGCAGGTCAGGGCAACCACCGGATTTGAAGAAgtaagtgtacctttcatttttcacttctat---tttattttattttaatttttcatatttttcatgttctgtt-acactgctgtggattgatctgtaattatcttttttgttttggggattcgggcag
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TAATCAGGGTCGGCTGTCATTCACCATGAGCAAATCAGGGCAACCCCCGGATTTGAAGAAGTACATGGACAAGAAGCTGAACAgtaagacatgtttattttttggaaggcgtttttctaccatctcctctattcatacttctgttg--cgagaggcaatcaaaataattttcctgtgactactaa---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7042559|gb|AW472453.1|AW472453EST: GAGCAGGTCAGGGCAACCACCGGATTTGAAGAA GTACATGGATAAGAAGCTTCAGA
genomic: GAGCAGGTCAGGGCAACCACCGGATTTGAAGAAgtaagtgtac ... attcgggcagGTACATGGATAAGAAGCTTCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGAGCAGGTCAGGGCAACCACCGGATTTGAAGAAgtaagtgtacctttcatttttcacttctattttattttattttaatttttcatatttttcatgttctgttacactgctgtggattgatctgtaattatcttttttgttttggggattcgggcag
- GAGCAG
- - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - TGAAGA