1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTCGCACCGAAACAAAAACCTTCCTCCTTGCACTCTTCCTTTTCACCACTCAAATGCTACTACTCTCGCTTGCTCACAAAACCCCTTCAATTTTCTCAGgtctctcttcccctcatctccctaatattctcacgcatttcctcttcaacaccgttctcaatcttcgtgctttttattaactatttcatttgccgtttct...
species | Glycine max |
transcript | GLYMA19G37940.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCGCTTGCTCACAAAACCCCTTCAATTTTCTCAG GTATAGGAAGAAGCAATTCTGAGCGAATTGCAACCTTCACGAATTGAATTTEST: gi|193312161|gb|FK275637.1|FK275637
genomic: CTCGCTTGCTCACAAAACCCCTTCAATTTTCTCAGgtctctcttc ... ccaatcacagGTATAGGAAGAAGCAATTCTGAGCGAATTGCAACCTTCACGAATTGAATTT
EST: TCAAATGCTACTACTCTCGCTTGCTCACAAAACCCCTTCAATTTTCTCAG GTATAGGAAGAAGCAATTCTGAGCGAATTGCAACCTTCACGAATTGAATTTEST: gi|213608692|gb|DB968979.1|DB968979
genomic: TCAAATGCTACTACTCTCGCTTGCTCACAAAACCCCTTCAATTTTCTCAGgtctctcttc ... ccaatcacagGTATAGGAAGAAGCAATTCTGAGCGAATTGCAACCTTCACGAATTGAATTT
EST: TCAAATGCTACTACTCTCGCTTGCTCACAAAACCCCTTCAATTTTCTCAG GTATAGGAAGAAGCAATTCTGAGCGAATTGCAACCTTCACGAATTGAATTT
genomic: TCAAATGCTACTACTCTCGCTTGCTCACAAAACCCCTTCAATTTTCTCAGgtctctcttc ... ccaatcacagGTATAGGAAGAAGCAATTCTGAGCGAATTGCAACCTTCACGAATTGAATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCGCACCGAAACAAAAACCTTCCTCCTTGCACTCTTCCTTTTCACCACTCAAATGCTACTACTCTCGCTTGCTCACAAAACCCCTTCAATTTTCTCAGgtctctcttcccctcatctccctaatattctcacgcatttcctcttcaacaccgttctcaatcttcgtgctttttattaactatttcatttgccgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcttc