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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAGGAATAAGGATCAGCAGGGAGAATTAGGTTTTTAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatccatcgcacttttttcttcttcctccatcaactcttattgtaggatctcaatcttatatgtaacttcttctatcatttctgtattctgtgat...

Basic information

species Glycine max
transcript GLYMA19G37370.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193696048|gb|FK637516.1|FK637516
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193444493|gb|FK409805.1|FK409805
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|208275363|gb|GE077731.1|GE077731
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193645919|gb|FK588332.1|FK588332
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|151401739|gb|EV271552.1|EV271552
EST:     AGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: AGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|12774578|gb|BG239505.1|BG239505
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193693745|gb|FK631227.1|FK631227
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193444904|gb|FK405302.1|FK405302
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTG
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTG
EST: gi|207796665|gb|GD768391.1|GD768391
EST:     TAGGGTCTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|16519552|gb|BI347337.1|BI347337
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|207838568|gb|GD812428.1|GD812428
EST:     TCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|298194278|gb|HO040926.1|HO040926
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCGGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|207791369|gb|GD760070.1|GD760070
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|4294611|gb|AI442215.1|AI442215
EST:     GTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: GTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193724048|gb|FK656370.1|FK656370
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193600891|gb|FK551646.1|FK551646
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193530435|gb|FK486634.1|FK486634
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193474772|gb|FK442841.1|FK442841
EST:     AGGGTTTACTACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: AGGGTTTAC-ACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193482641|gb|FK443988.1|FK443988
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|208108815|gb|GD907191.1|GD907191
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193597139|gb|FK554005.1|FK554005
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|208036804|gb|GD837407.1|GD837407
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193461160|gb|FK426767.1|FK426767
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|207758191|gb|GD726361.1|GD726361
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|207701247|gb|GD683794.1|GD683794
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|208246935|gb|GE049419.1|GE049419
EST:     CCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: CCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193351271|gb|FK314579.1|FK314579
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAAGAATCTACCCAGGAAAGGG
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAA-GA-TCTACCCAGGAAAGGG
EST: gi|208296129|gb|GE092267.1|GE092267
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|193707431|gb|FK645855.1|FK645855
EST:     GGGTTTTACTACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: GGG-TTTAC-ACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
EST: gi|208255541|gb|GE055224.1|GE055224
EST:     TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAA                         AACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT
genomic: TAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatcc ... cctttatcagAACTGAACTATGCCGATTCAGTGGTGCCAAGATCTACCCAGGAAAGGGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGAGGAATAAGGATCAGCAGGGAGAATTAGGTTTTTAGGGTTTACACCGAGCAGCCACACCTCCCGCAGCAGCCATGGTTCTCAAgtacgtatccatcgcacttttttcttcttcctccatcaactcttattgtaggatctcaatcttatatgtaacttcttctatcatttctgtattctgtgat

- - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG