1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TACTTGAGTTTCCTTTTTCTTATTGCTTTGCACTTTTATTTGTGCTCGTCTTCTTCTCCTTTCCTTACCACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccctccatctctcttttgctctttttgctgacacacacacacactcactcacaagtattaacttctctcatacgctttatttgccttttcgagatctgtgattaaaccttcacttgttttccttccttctgcag
species | Glycine max |
transcript | GLYMA19G35710.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAGAATAGTAGCAATCAGAGACTGAAG ACGAGCTTCCCCTTGCGCCGEST: gi|193466642|gb|FK432077.1|FK432077
genomic: GAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: ACAGAAGAATAGTAGCAATCAGAGACTGAAG ACGAGCTTCCCCTTGCGCCGEST: gi|208158107|gb|GD957832.1|GD957832
genomic: ACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: ACAGAAGTAATTAGTAGCAATCGGAGACTGAAG ACGAGCTTCCCCTTGCGCCGEST: gi|208201125|gb|GD999576.1|GD999576
genomic: ACAGAAG-AA-TAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: TCTTCTCCTTTCCTTACCACCAGAAGAATAGTAGCAATCAGAGACTGAAG ACGAGCTCCCCCTTGCGCCGEST: gi|22540225|gb|BU090068.1|BU090068
genomic: TCTTCTCCTTTCCTTACCA-CAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: AGAGACTGAAG ACGAGCTTCCCCTTGCGCCGEST: gi|208098884|gb|GD892687.1|GD892687
genomic: AGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: TAGTAGCAATCTAGTAGTACTGAAG ACGAGCTTCCCCTTGCGCCGEST: gi|193480869|gb|FK444308.1|FK444308
genomic: TAGTAGCAATC-AG-AG-ACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: ACAGAAGAATAGTAGCAATCAGAGACTGAAG ACGAGCTTCCCCTTGCGCCGEST: gi|208294947|gb|GE089502.1|GE089502
genomic: ACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: ACAGAAGAATAGTAGCAATCAGAGACTGAAG ACGAGCTTCCCCTTGCGCC-EST: gi|298189455|gb|HO037858.1|HO037858
genomic: ACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: ACCACAGAAGAATAGTAGCAATCAGAGACTGAAG ACGAGCTTCCCCTTGCGCCGEST: gi|8669991|gb|BE191098.1|BE191098
genomic: ACCACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: CAGAGACTGAAG ACGAGCTTCCCCTTGCGCCGEST: gi|17964359|gb|BM271095.1|BM271095
genomic: CAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: AGTAGCAATCAGAGACTGAAG ACGAGCTTCCCCTTGCGCCGEST: gi|298182727|gb|HO031462.1|HO031462
genomic: AGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
EST: ACCACAGAAGAATAGTAGCAATCAGAGACTGAAG ACGAGCTTCCCCTTGCGCCG
genomic: ACCACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccct ... ccttctgcagACGAGCTTCCCCTTGCGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTTGAGTTTCCTTTTTCTTATTGCTTTGCACTTTTATTTGTGCTCGTCTTCTTCTCCTTTCCTTACCACAGAAGAATAGTAGCAATCAGAGACTGAAGgttttcccctccatctctcttttgctctttttgctgacacacacacacactcactcacaagtattaacttctctcatacgctttatttgccttttcgagatctgtgattaaaccttcacttgttttccttccttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG