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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTCTTCTTCTCAGGATTCTTCATCTGACCTTGAATTTTCTCTCTCCCTATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGgtaacaataccaattcattgctcttgttcttttccaatttatttatatgctacaagagcttgatctcgtatggaggcaaaatctaaaaaacaaattagtg...

Basic information

species Glycine max
transcript GLYMA19G35180.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332278|gb|FK023927.1|FK023927
EST:     TATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAG                         TCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAA
genomic: TATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGgtaacaatac ... ttttattcagTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAA
EST: gi|298177793|gb|HO027346.1|HO027346
EST:     TATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAG                         TCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAA
genomic: TATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGgtaacaatac ... ttttattcagTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAA
EST: gi|14259737|gb|BG882645.1|BG882645
EST:     TATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAG                         TCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAA
genomic: TATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGgtaacaatac ... ttttattcagTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAA
EST: gi|13240207|gb|BG359516.1|BG359516
EST:     TATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAG                         TCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAA
genomic: TATGCCCCCGCTAATTCCTCCTTCACTTCTCTTCCCATTACCGCTCCCAGgtaacaatac ... ttttattcagTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAA