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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAGgtaatggaagtttagttgtttgtcatccttttatttatttatttttttgcattggtagattttgatttgattttccattcactaggctcagctgtttctt...

Basic information

species Glycine max
transcript GLYMA19G35140.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35140.2 (Glycine max), 5'ss of exon 1
lower sequence: AT1G04080.3 (Arabidopsis thaliana), 5'ss of exon 4
ATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAGgtaatggaagtttagttgtttgtcatccttttatttatttatttttttgcattggtag-attttgatttgattttccattcactaggctcagctgtttctt
||||  | || || |  || || |||||||||||||| || ||||||||||||||||  ||||| || |  |||||||| |||||| | ||  |  | |||||||| | | ||| |  | | |     | |   |||   | ||  |    ||   |  |  | ||    ||  |     ||     | |   | ||    
ATGAAAGAGCAGTGCTGGGAGTGACATATTCAGTGGATATCTGGTTGCATTATTGCACTTTTGCCATCAATACATATGGAGATCCAGAAACGATCAGAAGgtaatgaatgcttattcttctatttgtatgtgtattaacaacttggtgattttccaattacctagacaaaatggttttaccatctaaccctttttttaga-

upper sequence: GLYMA19G35140.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0005g04280.t01 (Vitis vinifera), 5'ss of exon 4
ATGAGCGTGCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAGgtaatggaagtttagttgtttgtcatccttttatttatttatttttttgcattggtagattttgatttgattttccattcactaggctcagctgtttctt-----
|||| || || |||||||| || || ||||| ||||| || |||||||| |||||||||||||| |||||||||||||| |||||| | ||  |  | ||||||| |   ||   ||||   | ||| || || ||||  ||       |||   |     ||||  |  | |     |||| ||  || | |  |  ||     
ATGAACGGGCAGTTCAAGGTGTGACTTATTCTGTGGATATTTGGTTGCACTATTGCATATTTGCCATAAGCACATATGGAGATCCAGATACAATCAGAAGgtaatagcttttcttttgtccattatcattgtagttatacataggagatcatgattg---cttgagct--tctcgttgtcacgagaatctggtaatctttaattg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|61241632|gb|DN591023.1|DN591023
EST:     TATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAG                         GCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCC
genomic: TATTGCATATTTGCTATAAGCACATATGGGGATCCAAACACTGTTCGTAGgtaatggaag ... tttgtttcagGCTTTTTGAACGAGGATTAGCTTATGTTGGAACAGATTATCTTTCTTTTCC