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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCAAATTCACGCCAGAGATCTTCGGATTCTCGACCCTCTCTTATCGTATCCTTCCACCATTTTGGGCAGAGAGAAAGTCATTGTTCTCAATTTAGAGgcaaattaaacactttctttccttcacttgttttgttctgctttctgattttgttttaacatcttattgatttcttccttttgcag

Basic information

species Glycine max
transcript GLYMA19G34430.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34430.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0141g00590.t01 (Vitis vinifera), 5'ss of exon 1
GGTTCAAATTCACGCCAGAGATCTTCGGATTCTCGACCCTCTCTTATCGTATCCTTCCACCATTTTGGGCAGAGAGAAAGTCATTGTTCTCAATTTAGAGgcaaatta--aacactttctttccttcacttgttttgt-tctgcttt----ctgattttgttttaacatcttattgatttcttccttttgcag---------------
 || || ||||| ||||||||||| || ||||| || |||||||| || |||||||| |||||| | || ||||| | ||  |||||||||||||| ||||  ||||    |   ||  || ||||  |    |  || | || |||     |||||||  |||    | || | | ||| ||| |||                    
CGTGCATATTCATGCCAGAGATCTGCGCATTCTTGATCCTCTCTTGTCATATCCTTCGACCATTCTTGGAAGAGAAAGAGCTATTGTTCTCAATTTGGAGgtgaattcttgatttttctttccctttgcaatctcagtgtttggtttgttgttgattttcctttgtttttttgtggcttttttcttttcttcttctttccggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524720|gb|BU083531.1|BU083531
EST:     ATCCTTCCACCATTTTGGGCAGAGAGAAAGTCATTGTTCTCAATTTAGAG                         CACATTAAAGCTATCATCACTGCAGATGAG
genomic: ATCCTTCCACCATTTTGGGCAGAGAGAAAGTCATTGTTCTCAATTTAGAGgcaaattaaa ... ccttttgcagCACATTAAAGCTATCATCACTGCAGATGAG