Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAGAGACAGAAAGTTGAGAGAGAAGTGTTCACGTCTTTGAGAAATGGGTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatacttttgaatctcaacaacaggaaaccccaattttttttattatttgattttggagaatgattatagaaatctcttctcatggttggcacag

Basic information

species Glycine max
transcript GLYMA19G33650.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171406|gb|HO016438.1|HO016438
EST:     GTACTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|9819421|gb|BE554934.1|BE554934
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|193396325|gb|FK363199.1|FK363199
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|13477752|gb|BG507504.1|BG507504
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298166996|gb|HO010435.1|HO010435
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGTACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|15663056|gb|BI700427.1|BI700427
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|9820763|gb|BE556273.1|BE556273
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|208042686|gb|GD841798.1|GD841798
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|208167184|gb|GD963030.1|GD963030
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|19453002|gb|BM954412.1|BM954412
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298187303|gb|HO034452.1|HO034452
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298197094|gb|HO041837.1|HO041837
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298173934|gb|HO017270.1|HO017270
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298168059|gb|HO013322.1|HO013322
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298194861|gb|HO043333.1|HO043333
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCATCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298192806|gb|HO033240.1|HO033240
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298184031|gb|HO029244.1|HO029244
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGACAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|151397536|gb|EV267409.1|EV267409
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|192319134|gb|FK009102.1|FK009102
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGAGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298166854|gb|HO010293.1|HO010293
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298166545|gb|HO009984.1|HO009984
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298195273|gb|HO043801.1|HO043801
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
EST: gi|298183535|gb|HO028748.1|HO028748
EST:     GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAG                         GATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT
genomic: GTGCTTCGGCATCGGTCACAGAAAAATCCATCCATGAATTCATGGTCAAGgtatatactt ... gttggcacagGATGCTAAGGGCAGAGACGTGAACCTCAGCACCTACAAAGGGAAGGTTCTT