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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGTGCATTGCCCCCTGAGAGCCATACTGCAAGGGTTGCATTCCTCATGCCCAAGTCTGTGCCCCCTCACAAAATGGCCTGTGTTGTTCATCTTGCAGgtaaattcaacaaaatgggctgcattctattatttgagttggtgagtttggagttttaatttaatctgttatcaagggatatgcaagtttgatttgaatg...

Basic information

species Glycine max
transcript GLYMA19G32670.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G32670.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g07700.t01 (Vitis vinifera), 5'ss of exon 1
CTGGGTGCATTGCCCCCTGAGAGCCATACTGCAAGGGTTGCATTCCTCATGCCCAAGTCTGTGCCCCCTCACAAAATGGCCTGTGTTGTTCATCTTGCAGgtaaattcaacaaaatgggctgcattctattatttgagttggtgagtttggagttttaatttaatctgttatcaagggatatgcaagtt-tgatttgaatg
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CTGAGTGCATTGCCTCCTGAGAGTCATACTGCAAGGGTTGCTTTCCTTACTCCCAAATTCGTGCCACCCCAGAAGATGGCTTGTGTGGTTCATCTTGCAGgtgacgtgatcaacctttagcttactcagtggacgataattttgtttttagattgttaaattgtcattgaaatagcagatggttgcactgtaacttaatt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258805|gb|BE346952.1|BE346952
EST:     GCCCAAGTCTGTGCCCCCTCACAAAATGGCCTGTGTTGTTCATCTTGCAG                         GAACTGGAGACCATACATTTGAGAGAAGACTGCGTCTTGGTGGACCCCTGA
genomic: GCCCAAGTCTGTGCCCCCTCACAAAATGGCCTGTGTTGTTCATCTTGCAGgtaaattcaa ... tggtgtgcagGAACTGGAGACCATACATTTGAGAGAAGACTGCGTCTTGGTGGACCCCTGA