1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACTCTCTTTCTGCAAAACGAAAATGGCGCAGAAGAAGAAAGCTAGGGTTTCCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAGgtaccctaaaaaattcatgctttttctttcgctttcctttgataatggattatttcactattcaaattcaattcgcgtgttgttactgtgatatattatgactttgtttgacggtggttgagtggttgtag
species | Glycine max |
transcript | GLYMA19G32480.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAG GTTCTTGGCGTGGAAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTAEST: gi|193371580|gb|FK335959.1|FK335959
genomic: CCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAGgtaccctaaa ... gtggttgtagGTTCTTGGCGTGGA-GAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTA
EST: CCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAG GTTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAAGAAAGGCGGEST: gi|208042947|gb|GD842745.1|GD842745
genomic: CCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAGgtaccctaaa ... gtggttgtagGTTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAA-GAA-GGCG-
EST: CCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAG GTTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTAC
genomic: CCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAGgtaccctaaa ... gtggttgtagGTTCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCTCTTTCTGCAAAACGAAAATGGCGCAGAAGAAGAAAGCTAGGGTTTCCGACGACGAGGAAATGGAAGTGCAACATGATCAAACCAGCCTTTACCAGgtaccctaaaaaattcatgctttttctttcgctttcctttgataatggattatttcactattcaaattcaattcgcgtgttgttactgtgatatattatgactttgtttgacggtggttgagtggttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG