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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTCAAATAGCTCATTATCAGAAGATTCAATCGCAGCTCTATATCTTTCTCTTGAAAGTGGCAAATTTTGGTTCCCCGCTCAAGTCTATAACCGTGAGgtaattggttgccacataatctgattcatgactttttatgcttctctgaatctcaatgactaaataccaatattctgcacaatggttcttccttttggggattttgtttcacactttcctttttcag

Basic information

species Glycine max
transcript GLYMA19G30990.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G30990.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g17390.1 (Oryza sativa), 5'ss of exon 1
ACAGTCAAATAGCTCATTATCAGAAGATTCAATCGCAGCTCTATATCTTTCTCTTGAAAGTGGCAAATTTTGGTTCCCCGCTCAAGTCTATAACCGTGAGgtaattggttgccacataatctgattcatgactttttatgcttctctgaatctcaatgacta--aataccaatattctgcacaatggttcttccttttggggattttgtttcacactttcctttttcag
  ||||     || |  |    || ||||| |||    |    ||||| ||  | || |||||||| || |||||||| ||||| ||||| ||||||||||||  |   |     || |    |||  | | || | || | | |   |   | |||  |||  | |  || |||| |   |||   | |     || ||    |||||                    
CAAGTCGGCCGGCCCCGTGCTCGATGATTCGATCATGTCGTGGTATCTGTCCATGGAGAGTGGCAAGTTCTGGTTCCCGGCTCAGGTCTACAACCGTGAGgta--taactttggaatcaagcaatt--ttaattatcatccctttgcaa---ttaatagctagcagtttcattattgtcaccaagcatgcaaa--ttgggatgatttgt--------------------

upper sequence: GLYMA19G30990.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G41170.1 (Arabidopsis thaliana), 5'ss of exon 1
ACAGTCAAATAGCTCATTATCAGAAGATTCAATCGCAGCTCTATATCTTTCTCTTGAAAGTGGCAAATTTTGGTTCCCCGCTCAAGTCTATAACCGTGAGgtaat--tggttgccacataatc-tgattcatgactttttatgcttctc-tg---aatctcaatgac-taaataccaatattctgcacaatggttcttccttttggggattttgtttcacactttcctttttcag
|   |||      |    | |   ||||||  |      |   ||      |||||||| |||||| ||||||||||| ||||||||||| || || ||||||||  || ||   |   |||| |||   | || ||  | |  || |  ||     | |   ||      ||   | |    || | ||   ||  | ||||||    | |   ||  ||              
ATCATCATCATATTTGGCACCTATAGATTCTGTGATGTATTGGTACTCGAATCTTGAAAATGGCAAGTTTTGGTTCCCTGCTCAAGTCTACAATCGCGAGgtaatcatgcttatgatcgaatcatgaacaaagatttcgtcttttttttgtgtgtggttttggtgttacccatttgactgaattggagaaaaattgcttcttttgatt-tctaaatttgcag-------------

upper sequence: GLYMA19G30990.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0040g01290.t01 (Vitis vinifera), 5'ss of exon 1
ACAGTCAAATAGCTCATTATCAGAAGATTCAATCGCAGCTCTATATCTTTCTCTTGAAAGTGGCAAATTTTGGTTCCCCGCTCAAGTCTATAACCGTGAGgtaattggtt---gccacata-atctgattcatgacttt-ttatgcttc-tctgaatctcaatgactaaataccaatattctgcacaatggttcttccttttggggat-----tttgtttcacactttcctttttcag-----
  || | |   | |||||||| |  |||||||||   |||   |||||||| || || ||||||||  |||||||||| ||||| |||||||||||||||||||   | |      | |||  | | |  | | | ||| |  | |||| | | ||  | ||| || ||       |      ||   |  || ||| |||||  | |     | ||  | |   |||||||| |  |     
TGAGCCCAGCTGTTCATTATCTGTTGATTCAATCAAGGCTTGGTATCTTTCCCTAGAGAGTGGCAAGCTTTGGTTCCCAGCTCAGGTCTATAACCGTGAGgtaaacagctcgaattatatatgttttaaccgtaagtttgtcgttcttcatatcaaattaaattacaaatctttggttgatgccattgttattgttctttttgttgttgaacatatgaatgaagttttcctttctgggtgcag

upper sequence: GLYMA19G30990.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S546_4V6.2 (Physcomitrella patens), 5'ss of exon 2
ACAGTCAAATAGCTCATTATCAGAAGATTCAATCGCAGCTCTATATCTTTCTCTTGAAAGTGGCAAATTTTGGTTCCCCGCTCAAGTCTATAACCGTGAGgtaattggttgccacataatctgattcatgactttttatgcttctctgaatctcaatgactaaataccaatattctgcacaatggttcttccttttggggattttgtttcacactttcctttttcag
 ||| |   |          |    |||||  |    ||    |||    | || ||||||||||  || ||||||||||| |||||||||||||| ||||    || || |||  |   ||| |   ||     || | ||| |    | ||  |||| ||  || |    ||  |  | |||  |  ||  |      |  |      |  | ||||        
CCAGCCTGCTGCGGTTCCGCCTCTGGATTCTCTTATGGCATGGTATTGGGCCCTGGAAAGTGGCAGCTTCTGGTTCCCCGCCCAAGTCTATAACCGAGAGg----tgtttaccatgt---ctgttgtgtg-----ttgtccttatgcacacct-gatgattacgtatcttgctttggtgctatgaattatctctgcactaacct------atccgttcc--------