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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTACGCTGATGCAAACTCAACACTGATTGTAAATGCTGCTTCCAATAATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttctccttctcattagctaattatccttgcttactactaagaaaatgggtggtattttattcttcaatgcactttaaatgaacttaagctatt...

Basic information

species Glycine max
transcript GLYMA19G30460.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193492396|gb|FK454806.1|FK454806
EST:     ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG                         GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAA
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAA
EST: gi|193466669|gb|FK432090.1|FK432090
EST:     ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG                         GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
EST: gi|193371747|gb|FK336000.1|FK336000
EST:     ATGCAACTGCAAGGCAAATTCCTAACACTTT-CTTGGAGTATTCGTTGAG                         GAGATTAATCA
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCA
EST: gi|208241351|gb|GE038767.1|GE038767
EST:     ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG                         GAGATTAATCATGCTGGCGC-GGGGGACGTGTGGGCTGAACTTGTTATC
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGAC-TGTGGGCTGAACTTGTTATC
EST: gi|193572995|gb|FK528738.1|FK528738
EST:     TGCAACTGCAAGGCAAATTCCTAACACTTTTTCTTGGAGTATTCGTTGAG                         GAGATTAATCATGCTGGCGCGAGGGG-ACTGTGGGCTGAACTTGTTATCAA
genomic: TGCAACTGCAAGGCAAATTCCTAACACTTTT-CTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGC-AGGGGGACTGTGGGCTGAACTTGTTATCAA
EST: gi|208078390|gb|GD874438.1|GD874438
EST:     ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG                         GAGATTAATCATGCTGGCGC
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGC
EST: gi|208257793|gb|GE051468.1|GE051468
EST:     ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG                         GAGATTAATCATGCTGGCGCAGGGGG
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGG
EST: gi|213591414|gb|DB955734.1|DB955734
EST:     ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG                         GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
EST: gi|193491629|gb|FK454249.1|FK454249
EST:     ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG                         GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
EST: gi|193459893|gb|FK425220.1|FK425220
EST:     ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG                         GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTT
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTT
EST: gi|213617613|gb|DB969325.1|DB969325
EST:     ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAG                         GAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT
genomic: ATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttc ... tattttccagGAGATTAATCATGCTGGCGCAGGGGGACTGTGGGCTGAACTTGTTATCAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGCTACGCTGATGCAAACTCAACACTGATTGTAAATGCTGCTTCCAATAATGCAACTGCAAGGCAAATTCCTAACACTTTTCTTGGAGTATTCGTTGAGgtaagttttctccttctcattagctaattatccttgcttactactaagaaaatgggtggtattttattcttcaatgcactttaaatgaacttaagctatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtgg