1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAACTCATATACCAACTCGGAGTTTCGGTCTTACCGTTTCCGATTCAAAACCCTAACTCGGATCCTCAAACTCAGTTGATTTCATACAACATGGCTTCGGgtacgtgttctttttctccattttcccccaacacttctttctcctgtagttaattttttcggttgctaaatcgtttcctttatttattcgctttgtcaat...
species | Glycine max |
transcript | GLYMA19G30100.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCTAACTCGGATCCTCAAACTCAGTTGATTTCATACAACATGGCTTCGG ATGCTGATATGGAGGACTATGGATTTGAGTACTCAGATGAGGAGCAAGAGGEST: gi|192319385|gb|FK009927.1|FK009927
genomic: CCCTAACTCGGATCCTCAAACTCAGTTGATTTCATACAACATGGCTTCGGgtacgtgttc ... tattttgtagATGCTGATATGGAGGACTATGGATTTGAGTACTCAGATGAGGAGCAAGAGG
EST: CCCTAACTCGGATCCTCAAACTCAGTTGATTTCATACAACATGGCTTCGG ATGCTGATATGGAGGACTATGGATTTGAGTACTCAGATGAGGAGCAAGAGGEST: gi|4313624|gb|AI460743.1|AI460743
genomic: CCCTAACTCGGATCCTCAAACTCAGTTGATTTCATACAACATGGCTTCGGgtacgtgttc ... tattttgtagATGCTGATATGGAGGACTATGGATTTGAGTACTCAGATGAGGAGCAAGAGG
EST: CCCTAACTCGGATCCTCAAACTCAGTTGATTTCATACAACATGGCTTCGG ATGCTGATATGGAGGACTATGGATTTGAGTACTCAGATGAGGAGCAAGAGG
genomic: CCCTAACTCGGATCCTCAAACTCAGTTGATTTCATACAACATGGCTTCGGgtacgtgttc ... tattttgtagATGCTGATATGGAGGACTATGGATTTGAGTACTCAGATGAGGAGCAAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTCATATACCAACTCGGAGTTTCGGTCTTACCGTTTCCGATTCAAAACCCTAACTCGGATCCTCAAACTCAGTTGATTTCATACAACATGGCTTCGGgtacgtgttctttttctccattttcccccaacacttctttctcctgtagttaattttttcggttgctaaatcgtttcctttatttattcgctttgtcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctcc