1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGgcaagtaaaattacttcttgtgtttttcatttctttgttctggcaaaattagtttacttgttttcactgtactgtttcatatagttcaccaactctagctctaaatcatgtttcacaataatgcag
species | Glycine max |
transcript | GLYMA19G28770.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGATTCAAAGCTTGAGAAAAGTTTACTGATTCCATTCAGGGAAATCAAG GTTGAATGTACCATACCTAAAGATGATGGCACCTTGCAATCTTATGTAGGGEST: gi|22524128|gb|BU082939.1|BU082939
genomic: TGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGgcaagtaaaa ... aataatgcagGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGG
EST: TGGATTCAAAGCTTGAGAAAAGTTTACTGATTCCATTCAGGGAAATCAAG GTTGAATGTACCATACCTAAAGATGATGGCACCTTGCAATCTTATGTAGGGEST: gi|209714190|gb|BW679519.1|BW679519
genomic: TGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGgcaagtaaaa ... aataatgcagGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGG
EST: TGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAG GTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGGEST: gi|24205146|gb|BU964399.1|BU964399
genomic: TGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGgcaagtaaaa ... aataatgcagGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGG
EST: TGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAG GTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGG
genomic: TGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGgcaagtaaaa ... aataatgcagGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGgcaagtaaaattacttcttgtgtttttcatttctttgttctggcaaaattagtttacttgttttcactgtactgtttcatatagttcaccaactctagctctaaatcatgtttcacaataatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT