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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAATGAGAGAGGTTGCCAACCTTATTCTGAGCTTCCCGGAAGAGAGGCCAATAATTGTTCTCTCTGCCATGGGAAAGACAACTAACATGCTTTTGCTGgtattgtttttctcactttttaatatatttttgttacattcctttggggttgcgttttggttgtggttgcattgcaggtcaatgtggtctgcaactcggtgcaattgagatgatgtagtcttcaatttataggtaatgagatactttttgtcttgttag

Basic information

species Glycine max
transcript GLYMA19G27500.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27500.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0244g00140.t01 (Vitis vinifera), 5'ss of exon 2
AAGAATGAGAGAGGTTGCCAACCTTATTCTGAGCTTCCCGGAAGAGAGGCCAATAATTGTTCTCTCTGCCATGGGAAAGACAACTAACATGCTTTTGCTGgtattgtttttctcactt---tttaatatatttttgttacattcctttggggttgcgttttggttgtggttgcattgcaggtcaatgtggtctgcaactcggtgcaattgagatgatgtagtcttcaatttataggtaatgagatactttttgtcttgttag
 || ||||||||||||||  | ||| ||||    ||||  || || |||||  | |||||||| ||||||||||||||||| |||||||  ||| | |||||| |    ||   | ||   ||| || |   |||  |  |||  | | | |||   |||   |   |  | | ||  |||      |||  || || | | ||    |||  |                                                
GAGGATGAGAGAGGTTGCTGATCTTGTTCTTCAATTCCGTGATGAAAGGCCTGTCATTGTTCTTTCTGCCATGGGAAAGACTACTAACAATCTTCTACTGgtaatccaattacaaattcaatttcatgtgcatttact--attattatagtgtt---tttcaatcacgcattcttta-aggagttcatgg--tgaaattggatgtttgtgacctag----------------------------------------------

upper sequence: GLYMA19G27500.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S286_35V6.1 (Physcomitrella patens), 5'ss of exon 1
AAGAATGAGAGAGGTTGCCAACCTTATTCTGAGCTTCCCGGAAGAGAGGCCAATAATTGTTCTCTCTGCCATGGGAAAGACAACTAACATGCTTTTGCTGgtattgtttttctcactttttaatatatttttgttacattcctttggggttgcgttttggttgtggttgcattgcaggtcaatgtggtctgcaactcggtgcaattgagatgatgtagtcttcaatttataggtaatgagatactttttgtcttgttag
 ||||||| ||| || ||  | |||||| |||| || ||||||||||  || || |||||||| |||||||||||||||||||| ||||    |||||||    |||   | |   |      |    || ||     |||     |    | |   || | || |    |||| | |||  |    | |||        |||| |                                                     
CAGAATGAAAGAAGTGGCACAACTTATTTTGAGTTTTCCGGAAGAGAAACCTATCATTGTTCTGTCTGCCATGGGAAAGACAACCAACA---ATTTGCTGAAGgtgtgcatgt-gttgcggggtgctattatgcagagttcaggaagcaacgagcgatg-tcgtagaaa-attgtacgtcttttcaatgtgctgtctctcgcaagt-----------------------------------------------------