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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGTGTCTCTTCCCGTCCACAACTCGGCATCATCTCAGCTCTGGAACCAATTGCAGGAACGAATCTCCAAGCATTCCTTCGACACACCTCTCTACAGAgtaattactaatatataacaataataataataattactttctctgctattcgctcgttgatcttcttctcttctggctcgcag

Basic information

species Glycine max
transcript GLYMA19G27360.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27360.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 1
---GGCAGTGTCTCTTCCCGTCCACAACTCGGCATCATCTCAGCTCTGGAACCAATTGCAGGAACGAATCTCCAAGCATTCCTTCGACACACCTCTCTACAGAgtaa--------------ttactaatatataacaataataataataattactttctctgctattcgctcgttgatcttcttctcttctggctc--gcag
   | | ||||||||||| || |  | ||| || || ||    || ||||| |  || |||||    || || ||||||||||||||||| ||||||||||| |||               || || || | |  | |||||   |||| ||  |||   || || | |||  |   |||| || |  | || ||   ||||
CTGGTCGGTGTCTCTTCCAGTTCGAACCTCCGCTTCTTC---ACTATGGAATCGTTTACAGGACGCCATTTCTAAGCATTCCTTCGACACTCCTCTCTACAGGgtacgccatccccgtatttttctcatctctctccataattcaaatatttcattttcttgttactagcttctctctcttttttttgtttgtcttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7478459|gb|AW666273.1|AW666273
EST:     AATTGCAGGAACGAATCTCCAAGCATTCCTTCGACACACCTCTCTACAGA                         TTCAACATTCCCAACCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCCCTC
genomic: AATTGCAGGAACGAATCTCCAAGCATTCCTTCGACACACCTCTCTACAGAgtaattacta ... tggctcgcagTTCAACATTCCCAACCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCCCTC
EST: gi|4294821|gb|AI442245.1|AI442245
EST:     AATTGCAGGAACGAATCTCCAAGCATTCCTTCGACACACCTCTCTACAGA                         TTCAACATTCCCAACCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCCCTC
genomic: AATTGCAGGAACGAATCTCCAAGCATTCCTTCGACACACCTCTCTACAGAgtaattacta ... tggctcgcagTTCAACATTCCCAACCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCCCTC
EST: gi|298194875|gb|HO043347.1|HO043347
EST:     AATTGCAGGAACGAATCTCCAAGCATTCCTTCGACACACCTCTCTACAGA                         TTCAACATTCCCAACCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCCCTC
genomic: AATTGCAGGAACGAATCTCCAAGCATTCCTTCGACACACCTCTCTACAGAgtaattacta ... tggctcgcagTTCAACATTCCCAACCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCCCTC
EST: gi|7925764|gb|AW831790.1|AW831790
EST:     AATTGCAGGAACGAATCTCCAAGCATTCCTTCGACACACCTCTCTACAGA                         TTCAACATTCCCAAC
genomic: AATTGCAGGAACGAATCTCCAAGCATTCCTTCGACACACCTCTCTACAGAgtaattacta ... tggctcgcagTTCAACATTCCCAAC