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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCACTCCATGTCTCCTATGAAGTTCTGGGTTGGGTTGCTTTTGCTTGCTGGTCTATCAGTTTCTACCCACAAGTCATTTTGAACTTTCGCAGGAAAAGgtaccactagccaaaaaggcaatgctttttcttatcatcgcttatactttctgtgtaattttttttttatcaattcttatcttgtaacttttttccctttattttatttttatgttttgattttccattgtggtgtag

Basic information

species Glycine max
transcript GLYMA19G23610.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G23610.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0219g00120.t01 (Vitis vinifera), 5'ss of exon 1
TTCCACTCCATGTCTCCTATGAAGTTCTGGGTTGGGTTGCTTTTGCTTGCTGGTCTATCAGTTTCTACCCACAAGTCATTTTGAACTTTCGCAGGAAAAGgtaccactagccaaaaaggcaatgctttttcttatcatcgcttatactttctgtgtaattttttttttatcaattcttatcttgtaacttttttccctttattttatttttatgttttgattttccattgtggtgtag
 | | ||  |  ||   ||| ||||  | || |||   ||||| | || |||||| |||||||||||||| |||||||||||||| || || || |||||||                    | |||||| || |  |     ||  |||||||   ||  ||| | | ||  |  || |||  | |  || |     ||| || | ||  |  | |||||     |  || |     
CTTCGCTGGAAATCGTATATCAAGTATTTGGATGGACAGCTTTCGTTTCCTGGTCCATCAGTTTCTACCCTCAAGTCATTTTGAATTTCCGAAGAAAAAGgt--------------------ttcttttttttttttttctggattttttctgttctatcctttctct-tctttcgttttctcttgagattctagtagttactt-acttagaattgttgata----aacgtag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718452|gb|BW666250.1|BW666250
EST:     TGGTCTATCAGTTTCTACCCACAAGTCATTTTGAACTTTCGCAGGAAAAG                         TGTGGTGGGGCTGAACTTTGATTTTGTGATGCTGAATTTGACGAAGCACTC
genomic: TGGTCTATCAGTTTCTACCCACAAGTCATTTTGAACTTTCGCAGGAAAAGgtaccactag ... tgtggtgtagTGTGGTGGGGCTGAACTTTGATTTTGTGATGCTGAATTTGACGAAGCACTC
EST: gi|192331771|gb|FK024875.1|FK024875
EST:     TGGTCTATCAGTTTCTACCCACAAGTCATTTTGAACTTTCGCAGGAAAAG                         TGTGGTGGGGCTGAACTTTGATTTTGTGATGCTGAATTTGACGAAGCACTC
genomic: TGGTCTATCAGTTTCTACCCACAAGTCATTTTGAACTTTCGCAGGAAAAGgtaccactag ... tgtggtgtagTGTGGTGGGGCTGAACTTTGATTTTGTGATGCTGAATTTGACGAAGCACTC