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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTTGTTTCTGCAGCTTCTCTGTCTCTTTTCTTCACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACCCTCATTTCgtaagttcctttttccccttttcatttttttgttgttgttattttttcaatgttaaactattactgcgacacggatctgtgactcgcttcttaattacgg...

Basic information

species Glycine max
transcript GLYMA19G22530.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295297|gb|FG985951.1|FG985951
EST:     ACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACTCTCATTTC                         TGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAAC
genomic: ACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACCCTCATTTCgtaagttcct ... atgattgcagTGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAAC
EST: gi|192323087|gb|FK017373.1|FK017373
EST:     ACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACCCTCATTTC                         TGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAAC
genomic: ACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACCCTCATTTCgtaagttcct ... atgattgcagTGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAAC
EST: gi|13181463|gb|BG352803.1|BG352803
EST:     ACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACCCTCATTTC                         TGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAG-TATTTAAGAGGAAAC
genomic: ACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACCCTCATTTCgtaagttcct ... atgattgcagTGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAAC
EST: gi|151402509|gb|EV272322.1|EV272322
EST:     ACTTTCTCCTTATTCTTCATTATATCCTCAGTGGGATCGACCCTCATTTC                         TGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAAC
genomic: ACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACCCTCATTTCgtaagttcct ... atgattgcagTGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAAC
EST: gi|18692685|gb|BM521533.1|BM521533
EST:     ACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACCCTCATTTC                         TGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAAC
genomic: ACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACCCTCATTTCgtaagttcct ... atgattgcagTGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAAC
EST: gi|192306980|gb|FG999985.1|FG999985
EST:     ACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACCCTCATTTC                         TGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAAC
genomic: ACTTTCTCCTTATTCTTCATTAGATCCTCAGTGGGATCGACCCTCATTTCgtaagttcct ... atgattgcagTGTGAACTGAGATGGCTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAAC