Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCACTCTGCTGCCTCGCTCTGTTTCTGTCTCTGTGTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcctctgctcttgtctcttccattcgatccatgcctgtctcttctttacgatgatgtttcttcggtgtatgtttatttatttatttatttatgc...

Basic information

species Glycine max
transcript GLYMA19G07240.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814074|gb|BI786349.1|BI786349
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16347628|gb|BI973223.1|BI973223
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|213588330|gb|DB967816.1|DB967816
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|20497769|gb|BQ272699.1|BQ272699
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCCTCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|37994808|gb|CF806397.1|CF806397
EST:     GAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCCTCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|10846529|gb|BF069382.1|BF069382
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCCTCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|15589584|gb|BI674200.1|BI674200
EST:     GGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16346896|gb|BI972491.1|BI972491
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16277262|gb|BI942289.1|BI942289
EST:     GCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|19347164|gb|BM892044.1|BM892044
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16276976|gb|BI942139.1|BI942139
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|213614241|gb|DB964929.1|DB964929
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|26057249|gb|CA800163.1|CA800163
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTTTGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16276969|gb|BI942135.1|BI942135
EST:     TTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: TTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16347130|gb|BI972725.1|BI972725
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|13481144|gb|BG510487.1|BG510487
EST:     TTGCGGCTGAGGATT--GATCACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: TTGCGGCTGAGGATTCCGA--ACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|33390613|gb|CA853808.1|CA853808
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16276769|gb|BI942034.1|BI942034
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16276528|gb|BI941908.1|BI941908
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|21889356|gb|BQ742569.1|BQ742569
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16277959|gb|BI942653.1|BI942653
EST:     CGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: CGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16278584|gb|BI942980.1|BI942980
EST:     GCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|6566985|gb|AW234612.1|AW234612
EST:     GCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|24136368|gb|BU926878.1|BU926878
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|27423799|gb|CA935319.1|CA935319
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16276943|gb|BI942122.1|BI942122
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16346830|gb|BI972425.1|BI972425
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|21601867|gb|BQ612198.1|BQ612198
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|213588682|gb|DB957690.1|DB957690
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16280903|gb|BI944207.1|BI944207
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16284843|gb|BI946300.1|BI946300
EST:     CGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCCTCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: CGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16277916|gb|BI942630.1|BI942630
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCCTCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16282786|gb|BI945205.1|BI945205
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|19052702|gb|BM731369.1|BM731369
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|23728373|gb|BU762238.1|BU762238
EST:     GATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|26059020|gb|CA801934.1|CA801934
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|16282301|gb|BI944942.1|BI944942
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCCTCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|37995429|gb|CF807018.1|CF807018
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCCTCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
EST: gi|27423736|gb|CA935256.1|CA935256
EST:     GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAG                         TTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG
genomic: GTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcct ... ttgattccagTTTAAGTCATCATGGGTAAGGAAAAGACTCACATCAACATTGTCGTCATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCACTCTGCTGCCTCGCTCTGTTTCTGTCTCTGTGTTTGCGGCTGAGGATTCCGAACGAGCGACCTTCTTCGTTTCTCGCAAAGgtaacagcctctgctcttgtctcttccattcgatccatgcctgtctcttctttacgatgatgtttcttcggtgtatgtttatttatttatttatttatgc

- - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc