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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGCACGTGCCGATGCTCCTCCTTATGGGATTGATTACCCTCCAAGTCATAGACCAACTGGTCGTTTCTCCAATGGCTACAACATTCCTGATCTTATCAgttaagttcacatatctcttcccacattttaaaactttttttagcttcaacattcatcttttaagcttcattttccatcatgcatatttgaagttttgaaccctttttggtcatgtagcttttcctataataattaacttaacatagacacataaagtttatgtctaactagttgggttgttttcag

Basic information

species Glycine max
transcript GLYMA19G06890.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599330|gb|DB972272.1|DB972272
EST:     TAGACCAACTGGTCGTTTCTCCAATGGCTACAACATTCCTGATCTTATCA                         GTCAGAGACTTGGTGCAGAGTCAACATTGCCATACTTGAGTCCAGAATTAA
genomic: TAGACCAACTGGTCGTTTCTCCAATGGCTACAACATTCCTGATCTTATCAgttaagttca ... ttgttttcagGTCAGAGACTTGGTGCAGAGTCAACATTGCCATACTTGAGTCCAGAATTAA
EST: gi|209713093|gb|BW653800.1|BW653800
EST:     TAGACCAACTGGTCGTTTCTCCAATGGCTACAACATTCCTGATCTTATCA                         GTCAGAGACTTGGTGCAGAGTCAACATTGCCATACTTGAGTCCAGAATTAA
genomic: TAGACCAACTGGTCGTTTCTCCAATGGCTACAACATTCCTGATCTTATCAgttaagttca ... ttgttttcagGTCAGAGACTTGGTGCAGAGTCAACATTGCCATACTTGAGTCCAGAATTAA
EST: gi|213591924|gb|DB973447.1|DB973447
EST:     TAGACCAACTGGTCGTTTCTCCAATGGCTACAACATTCCTGATCTTATCA                         GTCAGAGACTTGGTGCAGAGTCAACATTGCCATACTTGAGT
genomic: TAGACCAACTGGTCGTTTCTCCAATGGCTACAACATTCCTGATCTTATCAgttaagttca ... ttgttttcagGTCAGAGACTTGGTGCAGAGTCAACATTGCCATACTTGAGT
EST: gi|209716832|gb|BW654351.1|BW654351
EST:     TAGACCAACTGGTCGTTTCTCCAATGGCTACAACATTCCTGATCTTATCA                         GTCAGAGACTTGGTGCAGAGTCAACATTGCCATACTTGAGTCCAGAATTAA
genomic: TAGACCAACTGGTCGTTTCTCCAATGGCTACAACATTCCTGATCTTATCAgttaagttca ... ttgttttcagGTCAGAGACTTGGTGCAGAGTCAACATTGCCATACTTGAGTCCAGAATTAA
EST: gi|151393492|gb|EV263367.1|EV263367
EST:     TAGACCAACTGGTCGTTTCTCCAATGGCTACAACATTCCTGATCTTATCA                         GTCAGAGACTTGGTGCAGAGTCAACATTGCCATACTTGAGTCCAGAATTAA
genomic: TAGACCAACTGGTCGTTTCTCCAATGGCTACAACATTCCTGATCTTATCAgttaagttca ... ttgttttcagGTCAGAGACTTGGTGCAGAGTCAACATTGCCATACTTGAGTCCAGAATTAA