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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCATGGCACCCACGACTATCATCAGGAAACCCTCAACAATCTCAAGACTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttttctcactgaatgccttatgtatggtgaatggtgaatggtgatcgatttcttattcattaacgcttctgttttgtgcag

Basic information

species Glycine max
transcript GLYMA19G00870.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G00870.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0071g01060.t01 (Vitis vinifera), 5'ss of exon 1
CTCTCATGGCACCCACGACTATCATCAGGAAACCCTCAACAATCTCAAGACTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttttctcactgaatgccttatgtatggtgaatggtgaatggtgatcgattt-cttattcattaacgcttctgttttgtgcag--------------
||| || || || || || ||||||||||| ||  | || ||||||| ||  |||||||| || |||   || ||||||||||||||||| |||||||||||    | | | |||   |||  | |      | |    |||||  | ||   |||  |||||   | |    | | ||   || |               
CTCCCACGGGACTCATGAGTATCATCAGGAGACTTTGAATAATCTCAGGATCGCTATGCAAAATACTCAGATCCTCTGTGCCGTCATGCTCGACACTAAGgtccactatttaactctttgctctcttcgct-taatctttgaatttttatttctttatttattttgtgatatctgttttagatgaatcggatttaggaact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254331766|gb|GR843616.1|GR843616
EST:     CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttttc ... ttttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|192333778|gb|FK025501.1|FK025501
EST:     CTGCTATGCACAACACTGGTATGCTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttttc ... ttttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|16997283|gb|BM086655.1|BM086655
EST:     CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttttc ... ttttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|207821361|gb|GD790118.1|GD790118
EST:     CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGGCACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttttc ... ttttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|7685391|gb|AW756039.1|AW756039
EST:     TGTGCCGNCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: TGTGCCGTCATGCTTGACACTAAGgtaggttttc ... ttttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|298193226|gb|HO033660.1|HO033660
EST:     CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCCGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttttc ... ttttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|21285525|gb|BQ473396.1|BQ473396
EST:     CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttttc ... ttttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|207818162|gb|GD790193.1|GD790193
EST:     GCTTGGCACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTAT-CAACTT
genomic: GCTTGACACTAAGgtaggttttc ... ttttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
EST: gi|192333233|gb|FK026114.1|FK026114
EST:     CTGCTATGCACAACACTGGTATGCTCTGTGCCGTCATGCTTGACACTAAG                         GGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT
genomic: CTGCTATGCACAACACTGGTATACTCTGTGCCGTCATGCTTGACACTAAGgtaggttttc ... ttttgtgcagGGACCTGAGATTCGGACTGGTTTTCTGAAAGATGGAAAACCTATTCAACTT