Sequence
atgc intronic sequence ATGC exonic sequenceAGAGCAGATATTAGAAGATGGCAGACGCTGAGGATATTCAACCCCTTGTTTGCGACAATGGAACAGGAATGGTTAAGgtacagaatgcacactttttcgtttgatgcttctcgagggaattgttttgcgttaacttttccccttcgttctaattgcaatgtgtcttttcag
Basic information
species | Glycine max |
transcript | GLYMA19G00850.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G00850.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0019g01240.t01 (Vitis vinifera), 5'ss of exon 1
AGAGCAGATATTAGAAGATGGCAGACGCTGAGGATATTCAACCCCTTGTTTGCGACAATGGAACAGGAATGGTTAAGgtacagaatgcacactttttc-gtttga-tgcttctcgagggaattgttttgc---gttaacttttccccttcgttctaattgcaatgtgtcttttcag-------------
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-----AGGTAGTGCAAGATGGCAGATGGTGAGGATGTTCAACCACTTGTCTGTGATAATGGAACAGGAATGGTTAAGgtatcaaatgaggattctttctatgtgaatgtttagtagaatgcttgtattctacagtctgcctttttcttgtattcagtctgagataactgattgcaatgttatcttctag
upper sequence: GLYMA19G00850.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S337_26V6.1 (Physcomitrella patens), 5'ss of exon 2
AGAGCAGATATTAGAAGATGGCAGACGCTGAGGATATTCAACCCCTTGTTTGCGACAATGGAACAGGAATGGTTAAGgtacagaatgcacactttttcgtttgatgcttctcgagggaattgtt--ttgcgttaacttt-tccccttcgttctaattgcaatgtgtcttttcag----
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---GATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCGACAATGGATCAGGAATGGTCAAGgtacccactccatgaacttt-gctagttctccgttgaaactgtcgaggattatattcacaatgtcttgtctgtcgcatttctcatcgacctcctgaaaagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193471379|gb|FK438496.1|FK438496EST: CTGAGGATATTCAACCCCTTGTTTGCGACAATGGAACAGGAATGGTTAAG GCAGGATTTGCAGGAGATGATGCCCCACGTGCTGTGTTTCCTAGCATTGTT
genomic: CTGAGGATATTCAACCCCTTGTTTGCGACAATGGAACAGGAATGGTTAAGgtacagaatg ... gtcttttcagGCAGGATTTGCAGGAGATGATGCCCCACGTGCTGTGTTTCCTAGCATTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGCAGATATTAGAAGATGGCAGACGCTGAGGATATTCAACCCCTTGTTTGCGACAATGGAACAGGAATGGTTAAGgtacagaatgcacactttttcgtttgatgcttctcgagggaattgttttgcgttaacttttccccttcgttctaattgcaatgtgtcttttcag
- - - - - - - - - - - - - - GAGGAT