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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGTTGGTCCAGCCAAGGAACACCAACTTTATGAGGTTGATGGTCCAGAATCTGCCATAAAAGGGAGTAGAAAGATTCATCACAGCAATGATTTTAGgtaacacaaaatatatgtgattgagtaaaacaactatatagttttgattacctggcttggttgcatgtaattgaaacttactttacatccttggttcatttttgttgatgttgagcag

Basic information

species Glycine max
transcript GLYMA18G53850.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G53850.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0004g01300.t01 (Vitis vinifera), 5'ss of exon 3
GGAAGGTTGGTCCAGCCAAGGAACACCAACTTTATGAGGTTGATGGTCCAGAATCTGCCATAAAAGGGAGTAGAAAGATTCATCACAGCAATGATTTTAGgtaacacaaaatatatgtgattgagtaaaacaactatatagttttgattacctggcttggttgcatgtaattgaaa-cttactttacatcc-ttggttcattt------ttgttgatgttgagcag
     |||| ||| |  || |   |     | |||||| | || ||  ||||||||||||| ||||| ||||| ||||||| ||||||||||||  ||  ||||       | | ||   ||   |       || | |  | ||  |    |   ||  ||   | |  || |||  ||| | ||  | | |   || |||       |  ||||| |||| |||
ATGTCGTTGTTCCTGAAAATGGTGATGGTTTGTATGAGCTAGAAGGATCAGAATCTGCCATCAAAGGTAGTAGGAAGATTCTTCACAGCAATGAGATTGAgtaagtagttgtttttgcttttttttcttttttctttttcttcttcttcttttttttttttttttttttgttaaaaatttattatattttcatctatttattaacaacatccttgatattgatcag