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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTCACCTTCAAACCTTCTTCCATCGCTTTTAATCACAAAACTAACCTATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagttttctctgatctcttaatacacttttctcagatcgcgatccattcctgcatgtttcctttgttatctctcaacttcgcttgatctactattac...

Basic information

species Glycine max
transcript GLYMA18G53700.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706284|gb|BW680671.1|BW680671
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|7233907|gb|AW569249.1|AW569249
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|6566822|gb|AW234454.1|AW234454
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|213592579|gb|DB961839.1|DB961839
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|213593697|gb|DB971719.1|DB971719
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|7233788|gb|AW569131.1|AW569131
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|21887135|gb|BQ740348.1|BQ740348
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|254318817|gb|GR830381.1|GR830381
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|6913943|gb|AW395473.1|AW395473
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|18721154|gb|BM523327.1|BM523327
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|298174178|gb|HO017514.1|HO017514
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|7924409|gb|AW830435.1|AW830435
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|192317350|gb|FK010581.1|FK010581
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|24136489|gb|BU926999.1|BU926999
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
EST: gi|24205422|gb|BU964675.1|BU964675
EST:     ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTAC                         GGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG
genomic: ATCCGCTTCCCTCCGATCCATTCACTCGCTCCCTCTTAAAACCTCCTTACggtaagtttt ... tgttcattcaGGATCAAATGCTCCCAAACAGATGGGAATGGAAGTCCTGCAAAGAGGACAG