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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCCATCCGTTTTGTAAGgtttcgtaatttttgattcatgcatttccactaagccattttattttgaatctgaatgctgaagcttgttttcgtgtagctttcgttttattttaaaaaaacttgcttatgctttaattggctgatgcagtttagtgttattaatgtatatgcag

Basic information

species Glycine max
transcript GLYMA18G52310.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6912851|gb|AW394335.1|AW394335
EST:     CAGCCATCCGTTTTGTAAG                         GAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGCTAAGG
genomic: CAGCCATCCGTTTTGTAAGgtttcgtaat ... gtatatgcagGAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGCTAAGG
EST: gi|58023430|gb|CX710171.1|CX710171
EST:     CAGCCATCCGTTTTGTAAG                         GAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGATAAGG
genomic: CAGCCATCCGTTTTGTAAGgtttcgtaat ... gtatatgcagGAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGCTAAGG
EST: gi|21675568|gb|BQ627919.1|BQ627919
EST:     CAGCCATCCGTTTTGTAAG                         GAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGCTAAGG
genomic: CAGCCATCCGTTTTGTAAGgtttcgtaat ... gtatatgcagGAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGCTAAGG
EST: gi|58023747|gb|CX710488.1|CX710488
EST:     CAGCCATCCGTTTTGTAAG                         GAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGCTAAGG
genomic: CAGCCATCCGTTTTGTAAGgtttcgtaat ... gtatatgcagGAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGCTAAGG
EST: gi|58021757|gb|CX708498.1|CX708498
EST:     CAGCCATCCGTTTTGTAAG                         GAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGCTAAGG
genomic: CAGCCATCCGTTTTGTAAGgtttcgtaat ... gtatatgcagGAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGCTAAGG
EST: gi|58023732|gb|CX710473.1|CX710473
EST:     CAGCCATCCGTTTTGTAAG                         GAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGCTAAGG
genomic: CAGCCATCCGTTTTGTAAGgtttcgtaat ... gtatatgcagGAGGTTGTAAGAATTGCCGGTGAGTGATTACAATGGCTCCTGCTAAGG