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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGACCGTGGCTACCACCTCTTCTGCCTCCGTCCCATTCTTCCCTCTGTCCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCTAAGTgtatgttttctttgcatgcttcactttcattttcattcagatcccaaatcgttcaaagtaatgtgttcaatattcatgagctagcttttagggtttaattagggttctctatacaatttattaattaagctctggtgcttttgcaaattgcag

Basic information

species Glycine max
transcript GLYMA18G52260.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52260.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G24330.1 (Arabidopsis thaliana), 5'ss of exon 1
TGCGACCGTGGCTACCACCTCTTCTGCCTCCGTCCCATTCTTCCCTCTGTCCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAA---CCTAAGTgtatgttttctttgcatgcttcactttcattttcattcagatcccaaatcgttcaaa-gtaatgtgttcaatattcatgagctagcttttagggtttaattagggttctctatacaatttattaattaagctctggtgcttttgcaaattgcag
   ||    || |  || || ||||| ||| | || || ||    || || ||||||||||||||||||||||| ||||| ||||| ||  |    ||||| |||| | ||| |    || |  ||| |   | |   |||| | |     || ||  |     || |||| | | || | |   ||| ||||||| ||    |                                                     
---GATAAAGGGTTTCATCTTTTCTGTCTCAGACCGATCCTCGTTTCAGTTCCCAAAGGCTCTTGGTTCTGCCCTTCTTGTTCCAAACATCAGATCCCTAAATgtaagctttttcactatacc-cacatgactctaatttcaaagcttccttcttttgattaggatatgtttattgttga-gctttagattttaggattcttctg----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298179839|gb|HO025054.1|HO025054
EST:     CCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCTAAGT                         GTTTCCCTCTTGTGCAGACCAAAATCATTGACTTCTTTCGAATCCAACGCT
genomic: CCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCTAAGTgtatgttttc ... caaattgcagGTTTCCCTCTTGTGCAGACCAAAATCATTGACTTCTTTCGAATCCAACGCT