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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTCTCCGCCCTCAAAGCCCACGACTACCGCCGCCAGCTCTCCCTCCTCGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccctaaccactgatttcttccttcaatttttggaccatagcgttgtttccgatcatcttctgaactgattcattctattcata

Basic information

species Glycine max
transcript GLYMA18G51920.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51920.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv05s0062g01370.t01 (Vitis vinifera), 5'ss of exon 1
ACCCTCTCCGCCCTCAAAGCCCACGACTACCGCCGCCAGCTCTCCCTCCTCGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccctaaccactgatttcttccttcaatttttg----gaccatagcgttgtttccgatc--------atcttctgaactgattcattctattcata
 | ||| ||||||||||||| |||||| || ||||||||||     | || || |||||||||||||||||||| ||| ||||||| ||||| ||||||||||  |       |||    |||   ||||    |||||    ||  | ||     |||  | |         || ||  ||| || ||     |   | | 
-CTCTCGCCGCCCTCAAAGCTCACGACAACAGCCGCCAGCTTCGGATTCTTGCTGGCGTCGACCTCCCCCTCGGCGGCACCGGCCGTCCCGAAGCCGTCGGgttcgatttactccatcctttttccccttttccttttgttttgaaaaaagttactttttgggttcaaataggattttgggaattggttttgctttaacgt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610737|gb|DB963123.1|DB963123
EST:     CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|209707190|gb|BW656808.1|BW656808
EST:     CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|298192972|gb|HO033417.1|HO033417
EST:     CTCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|298182938|gb|HO028151.1|HO028151
EST:     CTCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|298192897|gb|HO033331.1|HO033331
EST:     CTCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|213613481|gb|DB956939.1|DB956939
EST:     CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT
EST: gi|298186811|gb|HO037444.1|HO037444
EST:     CTCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCG                         GGCTTTATTACGCTAAAATTGGGATTGGAACTCCTCCGAAGAATTACTATT
genomic: CGCCGGCGTCGACCTCCCCCTCGGAGGCTCCGGCCGCCCCGACGCCGTCGggtcagtccc ... tctattcataGGCTTTATTACGCTAAAATTGGTATTGGAACTCCTCCGAAGAATTACTATT