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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTCGATTAACAACAATCTCAATCTTCTACAGCTTATCCTCTCTCTCTCTCTTCTTCGCTTCCCCCAACAGCAATTTCATTCAAAACTCTCTCTCAGGtacctttttttcttctttttccaaatattctacctttgtcgttttctcgcatatcctctttcgtttttgatcgtttgattgccttcttatttggtaatcg...

Basic information

species Glycine max
transcript GLYMA18G50950.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820259|gb|BE555769.1|BE555769
EST:     GCAATTTCATTCAAAACTCTCTCTCAGG                         TGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCATTTGAACAG
genomic: GCAATTTCATTCAAAACTCTCTCTCAGGtacctttttt ... atatttcaggTGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCATTTGAACAG
EST: gi|193346976|gb|FK313807.1|FK313807
EST:     CCCAACAGCAATTTCATTCAAAACTCTCTCTCAGG                         TGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCATTTGAACAG
genomic: CCCAACAGCAATTTCATTCAAAACTCTCTCTCAGGtacctttttt ... atatttcaggTGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCATTTGAACAG
EST: gi|193320437|gb|FK286448.1|FK286448
EST:     CCCAACAGCAATTTCATTCAAAACTCTCTCTCTAGG                         TGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCATTTGAACA
genomic: CCCAACAGCAATTTCATTCAAAACTCTCTCTC-AGGtacctttttt ... atatttcaggTGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCATTTGAACA
EST: gi|193328427|gb|FK296002.1|FK296002
EST:     CCCAACAGCAATTTCATTCAAAACTCTCTCTCAGG                         TGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCATTTGAACAG
genomic: CCCAACAGCAATTTCATTCAAAACTCTCTCTCAGGtacctttttt ... atatttcaggTGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCATTTGAACAG
EST: gi|193364565|gb|FK329280.1|FK329280
EST:     CCCAACAGCAATTTCATTCAAAACTCTCTCTCAGG                         TGATTAAGAGAATCAGAGTTTGCTTTATCCATATAACAGATCATTTGAACA
genomic: CCCAACAGCAATTTCATTCAAAACTCTCTCTCAGGtacctttttt ... atatttcaggTGATTAAGAGAATCAGAGTTTGC-TTATCCATATAACAGATCATTTGAACA
EST: gi|193408585|gb|FK374129.1|FK374129
EST:     CCCAACAGTCAATTTCATTCAAAACTCTCTCTCAGG                         TGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCATTTGAACAG
genomic: CCCAACAG-CAATTTCATTCAAAACTCTCTCTCAGGtacctttttt ... atatttcaggTGATTAAGAGAATCAGAGTTTGCTTATCCATATAACAGATCATTTGAACAG