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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTTTTGTTCTTCCCCTTCCCAATCTTCAACTTTAGGGTTCCTTTAATCTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttctcccttctccattctcaatccccaatccgcttttcgtgcaaagattgttattctttttttattacttttggaaatgaaagcaagtgcttt...

Basic information

species Glycine max
transcript GLYMA18G49770.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209729574|gb|BW651888.1|BW651888
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAGCACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|207785632|gb|GD755729.1|GD755729
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|208198039|gb|GD995928.1|GD995928
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|27445912|gb|CA953035.1|CA953035
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|192308573|gb|FK002469.1|FK002469
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGAT-GACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|209717385|gb|BW659061.1|BW659061
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|10710463|gb|BF010181.1|BF010181
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|193336070|gb|FK298054.1|FK298054
EST:     GTTCACTCC-ACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: GTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|213615096|gb|DB962808.1|DB962808
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
EST: gi|213605934|gb|DB968658.1|DB968658
EST:     CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCG                         ATTTA-AA-TGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT
genomic: CTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttc ... ttccctctagATTTAGAAATGGATGGACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTCTTTTGTTCTTCCCCTTCCCAATCTTCAACTTTAGGGTTCCTTTAATCTCGTTATTCCTCTTCACTCCCAAGCTCCGTTCACTCCAACAACACTCCGgtgagctttctcccttctccattctcaatccccaatccgcttttcgtgcaaagattgttattctttttttattacttttggaaatgaaagcaagtgcttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT