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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTCCCATCAACAGCAACGATGGTGCAGAGGCTCACTTATCGCAAGCGCCATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcctctttgttctttttatttgttttgtgtttccccccctcctaattgtggttttttttattactattattattttgatctcaattatattccttcagttgtcgtcaaaatttgatttcgttgttgttgtttgatgtttttactatttttttttcaaatgggtatgtctcagg

Basic information

species Glycine max
transcript GLYMA18G49340.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G49340.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 1
--CACTCCCATCAACAGCAACGATGGTGCAGAGGCTCACTTATCGCAAGCGCCATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcctctttgttctttttatttgttttgtgtttccccccctcctaattgtggttttttttattactattattattttgatctcaattatattccttcagttgtcgtcaaaatttgatttcgttgttgttgtttgatgtttttactatttttttttcaaatgggtatgtctcagg
   ||  |   |  | ||||  ||||||||| ||||||| || || |||||||| ||||| || || |||||||| |||  ||| || || |||||||||||||            |  |||   | | |  | ||   |    | |||    ||||   | ||  |     |  |   | |  |||  |   |   ||  ||  ||||| |   |                                                                 
GAAACAGCGGCCGGCGGCAA-AATGGTGCAGCGGCTCACCTACCGGAAGCGCCACAGCTACGCCACAAAATCCAATCAGACCCGCGTGGTCAAGACCCCTGgtaagaccg------gcgcttcgcactcgcatggtcgattgatcgctc---gttgtttctgttcgtgcgggttgtggaaataggattcccgctgatttgtttatgttgttgattag----------------------------------------------------------------

upper sequence: GLYMA18G49340.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0108g00850.t01 (Vitis vinifera), 5'ss of exon 1
-CACTCCCATCAACAGCAACGATGGTGCAGAGGCTCACTTATCGCAAGCGCCATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcctctttgttctttt-tatttgttttgtgtttccccccctcctaattgtggttttttttattactattattattttgatctcaat-tatattccttcagttgtcgtcaaaatttgatttcgttgttgttgtttgatgtttttactatttttttttcaaatgggtatgtctcagg
        |         |  ||||| ||| | ||||| || ||||| || ||||||||||| |||||||| ||||||||| |||| || || |||||||||   | | || |     | ||  | ||| |||| |           |   |  |||   ||| |||       ||  | | ||||||  ||  | ||||                                                                                  
GGGAGGTGAGAGTGCTTGAAAATGGTCCAGCGTCTCACATACCGCAAACGGCATAGCTATGCCACCAAATCTAACCAGCACAGGGTCGTCAAAACCCCTGgtgattcttctgtaaaacccttggtttttcttttcttcagtattttattgcatctgttagtttatttgggtgatttggtttgttgatcggaacgtgtatt----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192810|gb|HO033244.1|HO033244
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|192310364|gb|FK002244.1|FK002244
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|151398936|gb|EV268807.1|EV268807
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|193559359|gb|FK512142.1|FK512142
EST:     CATAGCTATGCTACCAAATCCAACCAGTACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|163920689|gb|EH039970.1|EH039970
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|33388818|gb|CA852025.1|CA852025
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|192310365|gb|FK002245.1|FK002245
EST:     TGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: TGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|7284738|gb|AW597288.1|AW597288
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|58024564|gb|CX711305.1|CX711305
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|58014987|gb|CX701729.1|CX701729
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|192313246|gb|FK003366.1|FK003366
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|24205811|gb|BU965064.1|BU965064
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|5753167|gb|AI960454.1|AI960454
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|208160990|gb|GD961680.1|GD961680
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCT
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCT
EST: gi|7589597|gb|AW705368.1|AW705368
EST:     CAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|57575671|gb|CX548646.1|CX548646
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|208330531|gb|GE131356.1|GE131356
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|193483394|gb|FK451461.1|FK451461
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|207745288|gb|GD715964.1|GD715964
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAAGAAAGAGAGCAAGTGGACCTAAG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAA-GAA-GAGAGCAAGTGGACCTAAG
EST: gi|207719664|gb|GD702163.1|GD702163
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|208292112|gb|GE093374.1|GE093374
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|208136838|gb|GD937530.1|GD937530
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|193533122|gb|FK493684.1|FK493684
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|58024472|gb|CX711213.1|CX711213
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
EST: gi|192320359|gb|FK013449.1|FK013449
EST:     CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGG                         TGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG
genomic: CATAGCTATGCTACCAAATCCAACCAGCACCGGGTTGTTAAGACCCCTGGtatatttcct ... atgtctcaggTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGTGGACCTAAGTG