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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCCTTCTCAAATATTCTTGAGATCCCCATTTTCTCCGAAGCAAAGCCATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctctaattgtgttgaaattctaaattatgatttttttgggggtgtagaatttttccctacggttaaaagttgatgctttttgatgaatcctttaatgggtttttgtttgtttggtgtaga

Basic information

species Glycine max
transcript GLYMA18G49070.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204535|gb|BE330759.1|BE330759
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|213611942|gb|DB964834.1|DB964834
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|192319809|gb|FK011905.1|FK011905
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|13252098|gb|BG363001.1|BG363001
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|38192070|gb|CF921276.1|CF921276
EST:     ATGGCTAAGGGTCCTGATCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|18733680|gb|BM527751.1|BM527751
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|16347720|gb|BI973315.1|BI973315
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|20813195|gb|BQ297673.1|BQ297673
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|14516484|gb|BI095156.1|BI095156
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|10845161|gb|BF068322.1|BF068322
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|5760695|gb|AI966058.1|AI966058
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|16347860|gb|BI973455.1|BI973455
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|6746954|gb|AW317410.1|AW317410
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|213611750|gb|DB960650.1|DB960650
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|192314315|gb|FK007053.1|FK007053
EST:     ATGGCTAAGGGTCCTGGTCCCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|19935870|gb|BQ080621.1|BQ080621
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|213614932|gb|DB957012.1|DB957012
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|120531919|gb|EH260052.1|EH260052
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|19935867|gb|BQ080620.1|BQ080620
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|12497297|gb|BG047496.1|BG047496
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAAAAGTTCACCATGACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|209714837|gb|BW682002.1|BW682002
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|254315417|gb|GR825226.1|GR825226
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|8826174|gb|BE209834.1|BE209834
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|193721203|gb|FK662461.1|FK662461
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|26047978|gb|CA784608.1|CA784608
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|298183076|gb|HO028339.1|HO028339
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|192322089|gb|FK012193.1|FK012193
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|15813385|gb|BI785660.1|BI785660
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|208044511|gb|GD840599.1|GD840599
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|192329954|gb|FK021540.1|FK021540
EST:     ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
EST: gi|192314316|gb|FK007054.1|FK007054
EST:     ATGGCTAAGGGTCCTGGTCCCTACTCTGACATCGGCAAGAAAGCTAGGGA                         TCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA
genomic: ATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctct ... ttggtgtagaTCTGCTGTTCAAGGACTACCACAGTGACCAGAAGTTCACCATCACCACCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCCTTCTCAAATATTCTTGAGATCCCCATTTTCTCCGAAGCAAAGCCATGGCTAAGGGTCCTGGTCTCTACTCTGACATCGGCAAGAAAGCTAGGGGtactctctctaattgtgttgaaattctaaattatgatttttttgggggtgtagaatttttccctacggttaaaagttgatgctttttgatgaatcctttaatgggtttttgtttgtttggtgtaga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA