Sequence
atgc intronic sequence ATGC exonic sequenceCCTGACGTGAAAGCGAGGAGTTCTGATCACGTGAAAGCGTTCGACTCCGCGGAGAGCTGGCAGAGCTACTGGAAAGAGATCAAAGACTCCCCTAAGCCAGtacgtacatctcaactttatttaattaattgcgtttctatatatatgtacatacgtgcatgcttcttcatctcaatctcaacattttcttttgaactgcaacataaataaaaatcagg
Basic information
species | Glycine max |
transcript | GLYMA18G49020.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26269580|gb|CA820643.1|CA820643EST: GGAGAGCTGGCAGAGCTACTGGAAAGAGATCAAAGACTCCCGTAAGCCAG TTGTGANNNNNNNCACGGCGTCCTGGTGTGGCCCTTGCAAATTCATCACTC
genomic: GGAGAGCTGGCAGAGCTACTGGAAAGAGATCAAAGACTCCCCTAAGCCAGtacgtacatc ... aaaaatcaggTTGTGATTTTTTTCACGGCGTCCTGGTGTGGCCCTTGCAAATTCATCACTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTGACGTGAAAGCGAGGAGTTCTGATCACGTGAAAGCGTTCGACTCCGCGGAGAGCTGGCAGAGCTACTGGAAAGAGATCAAAGACTCCCCTAAGCCAGtacgtacatctcaactttatttaattaattgcgtttctatatatatgtacatacgtgcatgcttcttcatctcaatctcaacattttcttttgaactgcaacataaataaaaatcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA