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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATCTGCTATCACCTTTTCCGTTTCTTGCGATTCGACGATGGCCGATCAAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcggttattcacatccattctgactttttttttttactatgattttttcatctgttgttcccaatttcttaagtttagggtttttcttatttga...

Basic information

species Glycine max
transcript GLYMA18G48070.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098506|gb|HO760247.1|HO760247
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|151394924|gb|EV264795.1|EV264795
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|151394860|gb|EV264731.1|EV264731
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|192334481|gb|FK024468.1|FK024468
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|151399513|gb|EV269384.1|EV269384
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|192324207|gb|FK017938.1|FK017938
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|192330671|gb|FK021976.1|FK021976
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|192328659|gb|FK023159.1|FK023159
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|18041322|gb|BM309616.1|BM309616
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACTCCGATTTCTTGAACTCCGACTTCTTCAA
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAA---CGAATTCTTGAACTCCGACTTCTTCAA
EST: gi|254337009|gb|GR843188.1|GR843188
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|23727026|gb|BU761526.1|BU761526
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|192323750|gb|FK016056.1|FK016056
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|151400648|gb|EV270462.1|EV270462
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|22525062|gb|BU083873.1|BU083873
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|192320251|gb|FK014251.1|FK014251
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|6072788|gb|AW102175.1|AW102175
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|209717487|gb|BW671462.1|BW671462
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAAGAACTCCGACTTCTTGAAGAACTCCGACTTCTT
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAA---CGAATTCTT---GAACTCCGACTTCTT
EST: gi|9563837|gb|BE473346.1|BE473346
EST:     CTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: CTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|192328864|gb|FK019647.1|FK019647
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|209697524|gb|BW670025.1|BW670025
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAAGAACTCCGACTTCTTGAAGAACTCCGACTTCTT
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAA---CGAATTCTT---GAACTCCGACTTCTT
EST: gi|192298698|gb|FG990979.1|FG990979
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
EST: gi|9902592|gb|BE611623.1|BE611623
EST:     AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTG                         AGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC
genomic: AAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcgg ... tatgcttcagAGTAGTCTATATTTTGAACAACGAATTCTTGAACTCCGACTTCTTCAAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATATCTGCTATCACCTTTTCCGTTTCTTGCGATTCGACGATGGCCGATCAAAAGCTTTCAGAACCGGCGCTTAAACGTGAGCAGCTTGATGAATTCGTGgtatgttcggttattcacatccattctgactttttttttttactatgattttttcatctgttgttcccaatttcttaagtttagggtttttcttatttga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT