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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTTTGGAATTTCACTCTCTGACAGACCCAGATGGCAGCAATTCCTCATTTGTTCATCAGGGTTCTTCTTTGGATATCTTGTTAACGGCATCTGTGAggtatgtatgctttgttctctcttgattttcttgaattcttgaattcttgagtttaatgtttgtggtttcacagtttctgcaaatgggttgcagaaataa...

Basic information

species Glycine max
transcript GLYMA18G46240.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46240.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G12600.1 (Arabidopsis thaliana), 5'ss of exon 1
GTTTGTTTGGAATTTCACTCTCTGACAGACCCAGATGGCAGCAATTCCTCATTTGTTCATCAGGGTTCTTCTTTGGATATCTTGTTAACGGCATCTGTGAggtatgtatgctttgttctctcttgattttcttgaattcttgaattcttgagtttaatgtttgtggtttcacagtttctgcaaatgggttgcagaaataa----
   ||||||||||| | || ||||| | |||||||||||| ||||| ||||| ||||| || || ||||||||||| || || ||||| |||||||| |||||  ||    ||| || |    | ||     |||  |    || ||   ||| | |    | |  ||  | | |||     ||| | ||  |   ||      
-ACTGTTTGGAATTCCTCTTTCTGATAAACCCAGATGGCAACAATTTCTCATCTGTTCTTCTGGTTTCTTCTTTGGTTACCTCGTTAATGGCATCTGCGAGgttcgt---ttttttttttaaataataaatctgatataaccaaatcaatagtatcagagatttttttcgatatttttcatgaattgtttttatttattcgttt

upper sequence: GLYMA18G46240.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0048g01060.t01 (Vitis vinifera), 5'ss of exon 1
GTTTGTTTGGAATTTCACTCTCTGACAGACCCAGATGGCAGCAATTCCTCATTTGTTCATCAGGGTTCTTCTTTGGATATCTTGTTAACGGCATCTGTGAggtatgtatgc--tttgttctctcttgattttcttgaattcttgaattcttgag--tttaatgtttgtggtttcacagtttctgcaaatgggttgcagaaataa
   |||| ||||| || |||||||||||||||| ||||||||||||||||||||| || || |||||||||||||| || |||||||| ||||| |||||||||| |   |  |||| |        |       |||  || |  ||   |||  ||| | | ||| || | |   | |        |   ||          
-CCTGTTCGGAATCTCTCTCTCTGACAGACCCAAATGGCAGCAATTCCTCATTTGCTCTTCTGGGTTCTTCTTTGGTTACCTTGTTAATGGCATTTGTGAGgtattttctccgtttggttagctagaaaacgaaagaaaactggttttgaagaggttttgaagcttggggctacttgggtgtgttgtgttttttttttctt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208085167|gb|GD883227.1|GD883227
EST:     ATTTGTTCATCAGGGTTCTTCTTTGGATATCTTGTTAACGGCATCTGTGA                         GGAATATGTGTATAACAGGCTCCATTTCAGCTATGGTT
genomic: ATTTGTTCATCAGGGTTCTTCTTTGGATATCTTGTTAACGGCATCTGTGAggtatgtatg ... tgattttgcaGGAATATGTGTATAACAGGCTCCATTTCAGCTATGGTT
EST: gi|208304468|gb|GE103135.1|GE103135
EST:     TTCTTTGGATATCTTGTTAACGGCATCTGTGA                         GGAATATGTGTATAACAGGCTCCATTTCA
genomic: TTCTTTGGATATCTTGTTAACGGCATCTGTGAggtatgtatg ... tgattttgcaGGAATATGTGTATAACAGGCTCCATTTCA