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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTATCTAACACATAACATAGGACAGGCCCAAAACCAAAAAAAAGCCTCGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggtactctctctctctttctcttttgtttctctctttctttttttggttcctgttttttctttttgaattaagagttgagaattcacgtgcccc...

Basic information

species Glycine max
transcript GLYMA18G46140.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13251950|gb|BG362853.1|BG362853
EST:     CCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTG                         CAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
genomic: CCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggta ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
EST: gi|27446046|gb|CA953169.1|CA953169
EST:     CTCCAGGACAATTCCCTTCACCCAACCTAATTGGTACTTG                   
genomic: CTCCAGGACAATTCCCTTCACCCAACCT-A-----A-TTGgtacttggta ... tata
EST: gi|6482752|gb|AW201974.1|AW201974
EST:     CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTG                         CAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
genomic: CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggta ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
EST: gi|27809248|gb|CB063670.1|CB063670
EST:     GGACAATTCCCTTCACCCAACCTAATTGGTACTTG                   
genomic: GGACAATTCCCTTCACCCAACCT-A-----A-TTGgtacttggta ... tata
EST: gi|213607763|gb|DB959102.1|DB959102
EST:     CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGGTACTTG                   
genomic: CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCT-A-----A-TTGgtacttggta ... tata
EST: gi|192332474|gb|FK024235.1|FK024235
EST:     CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTG                         CAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
genomic: CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggta ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
EST: gi|12689405|gb|BG155802.1|BG155802
EST:     CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTG                         CAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
genomic: CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggta ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
EST: gi|209698252|gb|BW678023.1|BW678023
EST:     AGGACAATTCCCTTCACCCAACCTAATTGGTACTTG                   
genomic: AGGACAATTCCCTTCACCCAACCT-A-----A-TTGgtacttggta ... tata
EST: gi|22540711|gb|BU090554.1|BU090554
EST:     CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTG                         CAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
genomic: CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggta ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
EST: gi|13312697|gb|BG406348.1|BG406348
EST:     CTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTG                         CAA-TATTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
genomic: CTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggta ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
EST: gi|13562755|gb|BG550975.1|BG550975
EST:     GGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTG                         CAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
genomic: CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggta ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
EST: gi|22540679|gb|BU090522.1|BU090522
EST:     CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTG                         CAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
genomic: CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggta ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
EST: gi|151412092|gb|EV281904.1|EV281904
EST:     CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTG                         CAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
genomic: CGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggta ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
EST: gi|120530703|gb|EH258836.1|EH258836
EST:     CTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTG                         CAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT
genomic: CTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggta ... tatatggcagCAATTAGTGTAGAAGATGAGTACGTTGGATGCAACAAGGGCTGAACTTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTCTATCTAACACATAACATAGGACAGGCCCAAAACCAAAAAAAAGCCTCGTCTCTCGTGCCGATTCTCCAGGACAATTCCCTTCACCCAACCTAATTGgtacttggtactctctctctctttctcttttgtttctctctttctttttttggttcctgttttttctttttgaattaagagttgagaattcacgtgcccc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc