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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTTTCAACCATTAAATCAGAAGTAGTGTCTGCTGTGAACAACGAGCGTCGTATGGGAGCCTCGTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAagcaagtcaactttcactatgtcccttttttcattatgatttattttctctttcggtaccataagattatgcttgaaggcttaacctaatatatatgtat...

Basic information

species Glycine max
transcript GLYMA18G44310.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44310.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0058g00970.t01 (Vitis vinifera), 5'ss of exon 1
CACTTTCAACCATTAAATCAGAAGTAGTGTCTGCTGTGAACAACGAGCGTCGTATGGGAGCCTCGTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAagcaagtcaactttcactatgtcccttttttcattatgatttattttctctttcggtaccataagattatgcttgaaggcttaacctaatatatatgtat---
  ||||||| ||| ||||| | |||     | || |||||||| |||  ||| ||||| || ||  |||||||||||||||||||||||||||||||| | |||||||| |||| |||   || |  | | ||| | | |   |||| |  ||    |    | | ||||  |        |  | |  | |  |  |||   
-CCTTTCAATCATCAAATCTGCAGTGAACACGGCAGTGAACAATGAGGCTCGCATGGGCGCATCCCTGCTCCGTCTTCATTTCCATGATTGCTTTGTTAATgcaagtcatcttttact-catctccatgtccatga-gctagcttttattattaaccatttcatgcttattttctggattatcgctttcttttaacttatagc

upper sequence: GLYMA18G44310.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0058g00980.t01 (Vitis vinifera), 5'ss of exon 1
CACTTTCAACCATTAAATCAGAAGTAGTGTCTGCTGTGAACAACGAGCGTCGTATGGGAGCCTCGTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAagcaagtca--actttcac-tatgtcccttttttcattatgatttattttc--tctttcggtaccataagattatgcttgaaggcttaacctaatatatatgtat
  |||||||  || ||||| | |||    ||||| ||||| |  ||   ||| ||||| || ||  ||||||||||||||||||| || ||||||||| | ||||||||  |||| | | ||| || |  ||||||| |   |||| | |    | ||   ||  ||        |||| |    || |||| ||   | |    
-CCTTTCAATAATCAAATCTGCAGTGAACTCTGCAGTGAAGAGTGAAGCTCGCATGGGGGCGTCCCTGCTCCGTCTTCATTTCCACGACTGCTTTGTTAATgcaagtcaccacttcctcatatatctccattttcatgagcctttaatcttaaccattttataatattctgcatggctttatacttttacctcatgcttgt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15000427|gb|BI321241.1|BI321241
EST:     CGTATGGGAGCCTCGTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCA                         AGGATGTGATGCATCAGTACTATTGGATGACACATCGAGTTTCAAGGGTGA
genomic: CGTATGGGAGCCTCGTTGCTCCGTCTTCATTTCCATGATTGCTTTGTTCAagcaagtcaa ... ttccatggcaGGGATGTGATGCATCAGTACTATTGGATGACACATCGAGTTTCAAGGGTGA