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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATCACCACCAACCTTAACCTAGATGGAGTTGACACCAACCCCGTCTTTTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaaccttaatttgcctccctttctttgccatgtaaacttataatcacatgatctgtctttaggaacaatttttttttttgagtttttttagaa...

Basic information

species Glycine max
transcript GLYMA18G43830.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214008698|gb|DB987477.1|DB987477
EST:     GTCTCTACAATCATTGGCAAACCTGAGAA-G                         TGAGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAAC
genomic: GTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtT-TGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAAC
EST: gi|213611832|gb|DB958898.1|DB958898
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|213617987|gb|DB963620.1|DB963620
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|13477421|gb|BG507309.1|BG507309
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|213616831|gb|DB977030.1|DB977030
EST:     GAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: GAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|213603364|gb|DB970461.1|DB970461
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|192301665|gb|FG994387.1|FG994387
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|8827374|gb|BE211104.1|BE211104
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|19937585|gb|BQ081349.1|BQ081349
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|192298989|gb|FG992810.1|FG992810
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGACAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|8827974|gb|BE211704.1|BE211704
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|192311345|gb|FK003466.1|FK003466
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|213592711|gb|DB981257.1|DB981257
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|14008660|gb|BG725264.1|BG725264
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|15812826|gb|BI785101.1|BI785101
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGTTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|10709674|gb|BF009398.1|BF009398
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
EST: gi|192298990|gb|FG992811.1|FG992811
EST:     TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGACAAACCTGAGAAGT                         TTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA
genomic: TTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaa ... attgtgcagtTTGTAATGGTCATATTGAAGTCATCAGTACCAATATCATTTGAGGGTAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACATCACCACCAACCTTAACCTAGATGGAGTTGACACCAACCCCGTCTTTTCTGAAGCCACCACTGCTGTCTCTACAATCATTGGCAAACCTGAGAAGGtactcataaaccttaatttgcctccctttctttgccatgtaaacttataatcacatgatctgtctttaggaacaatttttttttttgagtttttttagaa

- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctt