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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAACATTGTGAGGTTAAGAGCATATTATTGGGCTCCTGATGAGAAGCTCTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGgtcagtgagttctttctttcacatgctgttcatgttttcatttttgccttttcttttttgggtcattgattttgttaatttgttgcattcactgattggg...

Basic information

species Glycine max
transcript GLYMA18G43730.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43730.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G67510.1 (Arabidopsis thaliana), 5'ss of exon 1
CCCAACATTGTGAGGTTAAGAGCATATTATTGGGCTCCTGATGAGAAGCTCTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGgtcagtgagttctttctttcacatgctgttcatgttt-tcatttttgccttttcttttttgggtcattgattttgtt--aatttgttgcattcactgattggg
|| ||  | |||| ||||||||| |||||||||||||||||||||||||| ||||| ||||| ||| |   |||||| | ||| ||   ||| ||||||||| | |   ||  ||||| |   | || ||  || || ||   || | ||   ||   |   ||    |||   |||    | | |||  || |   |||   
CCTAATGTGGTGAAGTTAAGAGCTTATTATTGGGCTCCTGATGAGAAGCTTTTGATTAGTGACTTCGTTAACAATGGAAGTTTAGCTGATGCTCTTAGAGgt-attacattacttcttccttcttctttttctgcttatcgaattagtcta--ctaactaaagtttgagatccggttctgttctattgacttaagaaatttat

upper sequence: GLYMA18G43730.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv01s0010g02910.t01 (Vitis vinifera), 5'ss of exon 3
CCCAACATTGTGAGGTTAAGAGCATATTATTGGGCTCCTGATGAGAAGCTCTTGATCAGTGATTTCATCTCCAATGGCAATTTGGCCACTGCCCTTAGAGgtcagtg----agttctttctttcacatgctg-ttcatgttttcatttttgccttttcttttttgggtcattgattttgttaatttgttgcattcactgattggg
|||||| |||| | ||| ||||| || |||||||||||||||||||||||| ||||    |||||||||||||||||||| ||||| | ||| ||  ||||| |       |  | |||| ||||| ||    ||||   |||  | |  |  ||     ||     |  | || | ||| | ||  ||  ||  | |  ||   
CCCAACGTTGTCAAGTTGAGAGCTTACTATTGGGCTCCTGATGAGAAGCTCCTGATTTCGGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTCCGAGgtaaccttcctaaatttttccttcacgtgtgaattcacaattttttctgcgttttcctaattaccaattttagaatgtgt-agttccttaaat--attattta--