Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAGACTTTTCTACCACAAATTGTATGATCGTTATGTCAAGCGCACCTCTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagcatgaacttacaattttatttggtttattcttcatcacttaaattcttgtgcatgttattcttatcacttgatttgtactctaacttttgcccaaaagttaatgaatctatcaattttgtcatgttgtttag

Basic information

species Glycine max
transcript GLYMA18G43720.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43720.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g27090.1 (Oryza sativa), 5'ss of exon 1
GGATAGACTTTTCTACCACAAATTGTATGATCGTTATGTCAAGCGCACCTCTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagcatgaacttacaattttatttggtttattcttcatcacttaaattcttgtgcatgttattcttatcacttgatttgt-actctaacttttgcccaaaagttaatgaatctatcaattttgtcatgttgtttag
 ||  | || ||| |||||||  ||||  | || || |||||||||||||| || |||||||| |||||||||| | |   ||||||||| || |||   ||  ||| |  || ||  |   |  | |     | |   |      || |  | || |   | || ||  |      |||||||| |  | | | ||||                                          
CGACCGCCTCTTCCACCACAAGATGTACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGTAACATCGGCGACCGGgtcggtaac-cgagctcccctctccactccccctctctct----gtttcagcttttttctttttttttaatccatgctgatttgtgatgcgagcatttgatttct------------------------------------

upper sequence: GLYMA18G43720.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G108008_T01 (Zea mays), 5'ss of exon 1
GGATAGACTTTTCTACCACAAATTGTATGATCGTTATGTCAAGCGCACCTCTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagcatgaacttacaattttatttggtttattcttcatcacttaaattcttgtgcatgttattcttatcacttgatttgtactctaacttttgcccaaaagttaatgaatctatcaattttgtcatgttgtttag
|||  | || ||| || | ||  ||||  | || |||||||||||||||||||| |||||||| ||||| |||    ||  ||| |||||||| |||   ||  |||        |||    |  ||  |   ||| |  |    | |   ||||  ||| ||| |  ||    |  |      | ||   |||  || | |   ||||                               
GGACCGCCTCTTCCACTATAAGATGTACAACCGCTATGTCAAGCGCACCTCTAAGTTCATGGCACACGACGAGGCTGACTCCTGCAACATTGGCGACCGGgtcggtaa-------ttattgctgcatc-gtcgtatccgccccttcctcg-ttctgatgc-tgtaaggctgtgaaaattggcgatgcttagactggtgtcaatttgttat------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12690557|gb|BG156893.1|BG156893
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACACTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACACTGGGTTGTT
EST: gi|12690558|gb|BG156894.1|BG156894
EST:     CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAA                         GTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACACTGGGTTGTT
genomic: CTAAATTCATGGCTCACGATGAGAACAACCTCTGTAACATTGGTGACAAAgttagtagca ... tgttgtttagGTTCGACTGGATCCTTCTAGGCCTTTGAGCAAGCATAAACACTGGGTTGTT